Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001575-TA|BGIBMGA001575-PA|IPR000210|BTB,
IPR013069|BTB/POZ
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.1 68416.m03591 expressed protein 34 0.16
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 33 0.49
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 33 0.49
At3g61960.1 68416.m06959 protein kinase family protein contains ... 32 0.86
At3g56150.1 68416.m06241 eukaryotic translation initiation facto... 32 0.86
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 32 0.86
At1g18040.1 68414.m02231 cell division protein kinase, putative ... 30 2.6
At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ... 30 2.6
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 30 3.5
At2g22795.1 68415.m02704 expressed protein 30 3.5
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 30 3.5
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 29 4.6
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 29 4.6
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 29 4.6
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 29 4.6
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 29 4.6
At5g28235.1 68418.m03421 Ulp1 protease family protein contains P... 29 6.0
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 29 6.0
At1g56720.2 68414.m06524 protein kinase family protein contains ... 29 6.0
At1g56720.1 68414.m06523 protein kinase family protein contains ... 29 6.0
At1g24160.1 68414.m03048 expressed protein Location of EST gb|H3... 29 6.0
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 29 8.0
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 29 8.0
At5g39785.2 68418.m04819 expressed protein 29 8.0
At5g39785.1 68418.m04818 expressed protein 29 8.0
At4g26730.1 68417.m03852 hypothetical protein 29 8.0
At3g61780.1 68416.m06931 expressed protein ; expression supporte... 29 8.0
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 29 8.0
At2g37380.1 68415.m04584 expressed protein 29 8.0
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce... 29 8.0
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp... 29 8.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 8.0
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 34.3 bits (75), Expect = 0.16
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 259 ECKKSVDNIFEDNYLESGILDENEMFQTTYLKKNKPIMDSNQLFDQILDQNDAPKITIDT 318
E KK ++ + ED D+NE ++ ++K K D + + ++ K +
Sbjct: 1115 EDKKDMEKL-EDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKEN--EEKSETKEIESS 1171
Query: 319 KNSKVSANLDHAKIISEVLKKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVER 378
K+ K + K + KK +K S+ KLK N ++KKQ++V E N +QK +
Sbjct: 1172 KSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLK-KNEEDRKKQTSVEE--NKKQKETK 1228
Query: 379 HDSN 382
+ N
Sbjct: 1229 KEKN 1232
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 32.7 bits (71), Expect = 0.49
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 351 KLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLIAMGAENINGPW 410
KL LN+ +K T EQKN +K+ER + E +++ +KH A A ++G W
Sbjct: 151 KLNELNSRVEKLHKTNEEQKNKIRKLER--ALKISEEEMLRTKHEATTKAKELMEVHGAW 208
Query: 411 I 411
+
Sbjct: 209 L 209
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 32.7 bits (71), Expect = 0.49
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 351 KLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLIAMGAENINGPW 410
KL LN+ +K T EQKN +K+ER + E +++ +KH A A ++G W
Sbjct: 151 KLNELNSRVEKLHKTNEEQKNKIRKLER--ALKISEEEMLRTKHEATTKAKELMEVHGAW 208
Query: 411 I 411
+
Sbjct: 209 L 209
>At3g61960.1 68416.m06959 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 626
Score = 31.9 bits (69), Expect = 0.86
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 274 ESGILDENEMFQTTYLKKNKP---IMDSNQLFDQILDQNDAPKITIDTKNSKV-SANLDH 329
+SG++D E+ + Y+ N+P + S+ FD L + P I +N KV S++L+
Sbjct: 346 QSGVVDSLELIEREYVLVNRPSASLEGSSDCFDTSLQDSGFPNIL--PRNEKVSSSSLEA 403
Query: 330 AKIISEV 336
K +S+V
Sbjct: 404 QKPLSDV 410
>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
identical to SP|O49160 Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
{Arabidopsis thaliana}
Length = 900
Score = 31.9 bits (69), Expect = 0.86
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Query: 239 SGLFNNSSSDSKHTTTLDIIECKKSVDNIFEDNYLESGILDENEMFQTTYLK--KNKPIM 296
S F S+S+ + ++ E + ++ + YL+SG D+++ +K K+K
Sbjct: 3 SRFFTQVGSESEDESDYEV-EVNEVQNDDVNNRYLQSGSEDDDDTDTKRVVKPAKDKRFE 61
Query: 297 DSNQLFDQILDQNDAPK-ITIDTKNSKVSANLDHAKIISEVLKKYSHLLKG----SKNIK 351
+ DQ+ + +++ KV+ L+ I+E +K + +K +
Sbjct: 62 EMTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEAVKPPTLYIKTLVMLEDFLN 121
Query: 352 LKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKL 398
+ N KKK ST + + K + +N YE D+ + A ++
Sbjct: 122 EALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDINKYREAPEV 168
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.9 bits (69), Expect = 0.86
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 280 ENEMFQTTYLKKNKPIMDSNQLFDQILDQNDAPKITIDTKNSKVSANLDHAKIISEVLKK 339
E + F Y KK++ +N++ D + + +D N +LD +S
Sbjct: 97 EQDYFAHVYGKKHQE--KANEVADMDYSKQQSEHPAVDKNNLTQQPDLDIYVGLSNDYPW 154
Query: 340 YSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLI 399
+ L + + +L N KK E+ +++Q+ + + T + + I
Sbjct: 155 FCSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDYSKQQIEVDI 214
Query: 400 AMGAENINGPWICLICGTQA 419
+G N PW C +C +A
Sbjct: 215 NVGLSNCY-PWFCSLCNVKA 233
>At1g18040.1 68414.m02231 cell division protein kinase, putative
similar to cell division protein kinase 7 [Homo sapiens]
SWISS-PROT:P50613
Length = 391
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 64 EMYEDCLVMPDDLQADVV-VPIVNFMYTGQLEFRLDLLEKLYQTSLIMKMPVLTKLLKAH 122
+ + D +PD ++ V P + ++ + LDLL K++ K + K H
Sbjct: 232 DQWPDLTKLPDYVEYQFVPAPSLRSLFPAVSDDALDLLSKMFTYD--PKARISIKQALEH 289
Query: 123 RASQNPQCYAPKHKSSEPTPSTSNKRSYGK 152
R + K +P P K SYGK
Sbjct: 290 RYFTSAPAPTDPAKLPKPVPKQDGKSSYGK 319
>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
V-ATPase C subunit / vacuolar proton pump C subunit
(DET3) identical to vacuolar ATP synthase subunit C
SP:Q9SDS7 from [Arabidopsis thaliana]
Length = 375
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 341 SHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLIA 400
S + K ++K+++ N + Q +K S R SN D+++S+H L+A
Sbjct: 127 SQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEHLVTLLA 186
Query: 401 MGAENINGPWI 411
+ + W+
Sbjct: 187 VVPKYSQKDWL 197
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 328 DHAKIISEVLKKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYET 387
D +I SE L K H + N + ++ K+ +++KN + KVE + ET
Sbjct: 55 DLEEIFSEFLNKRDHEAAANGNTEANVVEAVENVKKDK-KKKKNKETKVEVTEEEKVKET 113
Query: 388 DVI 390
D +
Sbjct: 114 DAV 116
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.9 bits (64), Expect = 3.5
Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 11/251 (4%)
Query: 137 SSEPTPSTSNKRSYGKAFDNKSACKEKKVYKPVNINKEIMYRPSSPYIQNKKNLMTDPKP 196
SSE + K + G D KEK + + NI + ++ ++ K
Sbjct: 262 SSEESEVEEKKENRG--IDESEESKEKDIDEKANIEEARENNYKGDDASSEVVHESEEKT 319
Query: 197 TRYELSEEFDGDGVFDSSFCNISYTSQPLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTLD 256
+ E SE+ + + S L P+T S + SS + +L+
Sbjct: 320 SESENSEKVEDKSGIKTEEVEDSVIKSVL---PNTTDNGESSSDEKSTGSSSGHESDSLE 376
Query: 257 IIECKKSVDNIFEDNYLESGILDENEMFQTTYLKKNKPIMDSNQLFDQILDQNDAPKITI 316
I K +++ ++ LE D N T K +Q ++ Q ++
Sbjct: 377 GI--KSEGESMEKNELLEKEFNDSNGESSVTG-KSTGSGDGGSQETSEVSSQEESKGKES 433
Query: 317 DTKNSKVSANLDHAKIISEVLKKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKV 376
+TK+ + S++ + +K K+ + S + T K+K + ++KN ++
Sbjct: 434 ETKDKEESSSQEESKDRETETKEKE---ESSSQEETMDKETEAKEKVESSSQEKNEDKET 490
Query: 377 ERHDSNFTYET 387
E+ +S+F ET
Sbjct: 491 EKIESSFLEET 501
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 29.9 bits (64), Expect = 3.5
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 269 EDNYLESGILDENEMFQTTYLKKNKPIM---DSNQLFDQILDQNDAPKITIDTKNSKVSA 325
E Y+++ I D Q + N+ + +S + FD L QN + +N +VS
Sbjct: 215 ETTYMKTLISDRTRQVQALGERNNETLSIECNSKKAFDGEL-QNVLKTVVTWDENRRVSV 273
Query: 326 NLDHAKIISEVLKKYSHLLK 345
L H + V +K+ H+L+
Sbjct: 274 QLSHEEQQQNVTEKWIHMLR 293
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 29.5 bits (63), Expect = 4.6
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 8/166 (4%)
Query: 93 LEFRLDLLEKLYQTSLIMKMPVLTKLL----KAHRASQNPQCYAPKHKSSEPTPSTSNKR 148
LEF DL + + K ++TKL+ K H + K + TP S+
Sbjct: 437 LEF-CDLFDISVAKATTKKEDIVTKLVEFLEKPHATTDVLVNEKEKGVKRKRTPKKSSPA 495
Query: 149 SYGKAFDNKSACKEKKVYKPVNINKEIMYRPSSPYIQNKKNLMTDPKPTRYELSEEFDGD 208
+ G + +SA +KK + NK+ + + K++ + K E EE + +
Sbjct: 496 A-GSSSSKRSAKSQKKTEEATRTNKKSVAHSDDESEEEKEDDEEEEKEQEVEEEEEENEN 554
Query: 209 GVFDSSFCNISY--TSQPLMVHPDTKKRYSKKSGLFNNSSSDSKHT 252
G+ D S S+ + + + +KK + +SSD K +
Sbjct: 555 GIPDKSEDEAPQLSESEENVESEEESEEETKKKKRGSRTSSDKKES 600
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 29.5 bits (63), Expect = 4.6
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 280 ENEM--FQTTYLKKNKPIMDSNQLFDQILDQNDAPKITIDTKNSKVSANLDHAKIISEVL 337
ENE+ + K + I N + + Q + + K ++ + KIIS+
Sbjct: 753 ENEVSGLEMELAKSQREIESLNSEHNYLEKQLASLEAASQPKTDEIDRLKELKKIISKEE 812
Query: 338 KKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERH-DSNFT 384
K+ +L KGSK +K K+ ++ QK +K++ D N T
Sbjct: 813 KEIENLEKGSKQLKDKLQTNIENAGGEKLKGQKAKVEKIQTDIDKNNT 860
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 166 YKPVNINKEIMYRPSSPYIQNKKNLMTDPKP 196
Y P N N +RP P +QN N P P
Sbjct: 21 YPPPNSNPNFFFRPPPPPLQNPNNYSIVPSP 51
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 29.5 bits (63), Expect = 4.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 153 AFDNKSACKEKKVYKPVNINKE 174
A +NKS+ EKKV K VNIN E
Sbjct: 259 ASENKSSSAEKKVVKSVNINGE 280
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 29.5 bits (63), Expect = 4.6
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 283 MFQTTYLKKNKPIMDSNQLFDQILDQNDAPKITIDTKNSKVSANLDHAKII-SEVLKKYS 341
+F + K + ++L + + + + + + K+ LD+A+ S L S
Sbjct: 36 LFGEVAVSKQRSTPRRSRLSSESVCDKETQLMLVHKEFMKIKQKLDNAESTRSRALDDLS 95
Query: 342 HLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVER--HD 380
K +++ K L T NK KQS + ++ QQ+ E+ HD
Sbjct: 96 KAKKTMEDLSNK-LETVNKSKQSAIDTKETVQQREEQLEHD 135
>At5g28235.1 68418.m03421 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; simlar to At4g08430, At5g45570
Length = 568
Score = 29.1 bits (62), Expect = 6.0
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 143 STSNKRSYGKAFDNKSACKEKKVYKPVNINKEIMYRPSSPYIQNKKNLMTDPKPTRYELS 202
S NK + K K K K VN+ K +P K + PKP + + S
Sbjct: 195 SVKNKEAATKVLTKKKVAKSDKKKTIVNVEKVEKPKPEMKKTVVKVEKVDSPKPLQ-KKS 253
Query: 203 EEFDGDGVFDSSFCNISYTSQPLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTLDIIEC-K 261
FD +++ V+ D K S F+N + + T D + +
Sbjct: 254 VAAPTTKTFDDDVVDVTD-----KVNADNLKMASSSEETFSNPTDQMANKATADALRALQ 308
Query: 262 KSVDNI 267
+ +DN+
Sbjct: 309 EGLDNL 314
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 29.1 bits (62), Expect = 6.0
Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 255 LDIIECKKSVDNIFEDNYLESGILDENEMFQTTYLKKNKPIMDSNQLFDQILDQNDAPKI 314
+++ CK + NYLE ++ ++++ K + M + + ++ ++D
Sbjct: 390 IEMSYCKFEAFKVLAKNYLE---IETHDLYGEIERKLEETDMSPADVAETLMPKSDEEDA 446
Query: 315 TIDTKNSKVSANLDHAKIISEVLKKYSHLLKGSKNIK-LKILNTPNKKKQSTVREQKNSQ 373
I K ++ L+ K + L + K K K +K +KK+ T ++K +
Sbjct: 447 DICIK--RLVKTLEEEKEKARKLAEEEEKKKAEKEAKKMKKAEEAEEKKKKTEEDEKKEK 504
Query: 374 QKVERHDSNFTYE 386
K + + N + +
Sbjct: 505 VKAKEENGNVSQQ 517
>At1g56720.2 68414.m06524 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 492
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 207 GDGVFDSSFCNISYTSQPLMVHPDTKKRYSK--KSGLFNNSSSDSKHTTTLDIIECKKSV 264
G+G+ + + S+ +MVH D +K+ S +SG F++ KH+ + + + S+
Sbjct: 85 GEGILLTIQDKNNKDSEKVMVHLDMRKKRSSSGRSGSFHHLEIIDKHSDSAEEVSASSSL 144
Query: 265 DNI 267
NI
Sbjct: 145 YNI 147
>At1g56720.1 68414.m06523 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 492
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 207 GDGVFDSSFCNISYTSQPLMVHPDTKKRYSK--KSGLFNNSSSDSKHTTTLDIIECKKSV 264
G+G+ + + S+ +MVH D +K+ S +SG F++ KH+ + + + S+
Sbjct: 85 GEGILLTIQDKNNKDSEKVMVHLDMRKKRSSSGRSGSFHHLEIIDKHSDSAEEVSASSSL 144
Query: 265 DNI 267
NI
Sbjct: 145 YNI 147
>At1g24160.1 68414.m03048 expressed protein Location of EST
gb|H36355
Length = 540
Score = 29.1 bits (62), Expect = 6.0
Identities = 26/133 (19%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 230 DTKKRYSKKSGLFNNSSSDSKHTTTLDIIECKKSVDNIFED--NYLESGILDENEMFQTT 287
D K + + N S D + T+ + EC+ SVD + ++ + ++S +L++ E
Sbjct: 143 DEDKHVTDITAKVNQVSIDESNEETIVVKECQSSVDTVKDEVKDSVDSPVLEKAEEIALE 202
Query: 288 YLKKNKPIMDSNQLFDQILDQNDAPKI--------TIDTKNSKVSANLDHAKIISEVLKK 339
+K + ++ + +++L +++ + I +N V AN K++ + KK
Sbjct: 203 E-EKIEMVVHVQERSEEVLQEDEKEETEVREEVRDDISLQNDTVDANETTKKVVKKE-KK 260
Query: 340 YSHLLKGSKNIKL 352
+ + K N+++
Sbjct: 261 PNLIKKNDGNVRI 273
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/62 (19%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 345 KGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSNFTYETDVIDSKHAAKLIAMGAE 404
KG K KLK+ ++ ++ + ++K+ ++K + ++ + K ++K + +G E
Sbjct: 30 KGKKEQKLKLSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSS-SEKKKSSKKVKLGVE 88
Query: 405 NI 406
++
Sbjct: 89 DV 90
>At5g40820.1 68418.m04956 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
similar to Atr protein [Xenopus laevis] GI:11385422;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
Length = 2702
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 301 LFDQILDQNDAPKITIDTKNSKVSANLDHAKIISEVLKK 339
L D+ LD DA + + +S S + D AKI+ ++KK
Sbjct: 1802 LMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKK 1840
>At5g39785.2 68418.m04819 expressed protein
Length = 607
Score = 28.7 bits (61), Expect = 8.0
Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 15/227 (6%)
Query: 160 CKEKKVYKPVNINKEIMYRPSSPYIQNKKNLMTDPKPTRYELSEEF-DGDGVF-DSSFCN 217
C ++K K ++ + + ++ K R+ E+F + D F DSS
Sbjct: 97 CLKEKQEKTEDLGYSVFHGEDKVKTEDYSVSSFKKKKIRFLTEEDFLESDSDFVDSSQTF 156
Query: 218 ISYTSQPLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTLDIIECKKSVDNIFEDNYLESGI 277
S + D + KK N SD+ + + D E ++ N FE + +
Sbjct: 157 TSNDEDGFLSDSDFAETSLKKG---QNRKSDNSGSGS-DSEEEEEEDTNGFESLWEHQDL 212
Query: 278 LDENEMFQTTYLKKNKPIMDSNQLFDQILDQNDAPKITIDTKNSKV--SANLDHAKIISE 335
+++ +M +KK K I + ++ + +D PKI D K ++ H I E
Sbjct: 213 IEQLKM----EMKKVKAIGGLTTILEEEEEDDDCPKIMEDLKPWRIEEEKKFKHVDTIGE 268
Query: 336 VLKKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSN 382
V K H + KL IL+ K + + K+ QQ SN
Sbjct: 269 VHK--FHRSYRERMRKLDILSF-QKSYALGLLQSKSPQQATSTLGSN 312
>At5g39785.1 68418.m04818 expressed protein
Length = 606
Score = 28.7 bits (61), Expect = 8.0
Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 15/227 (6%)
Query: 160 CKEKKVYKPVNINKEIMYRPSSPYIQNKKNLMTDPKPTRYELSEEF-DGDGVF-DSSFCN 217
C ++K K ++ + + ++ K R+ E+F + D F DSS
Sbjct: 97 CLKEKQEKTEDLGYSVFHGEDKVKTEDYSVSSFKKKKIRFLTEEDFLESDSDFVDSSQTF 156
Query: 218 ISYTSQPLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTLDIIECKKSVDNIFEDNYLESGI 277
S + D + KK N SD+ + + D E ++ N FE + +
Sbjct: 157 TSNDEDGFLSDSDFAETSLKKG---QNRKSDNSGSGS-DSEEEEEEDTNGFESLWEHQDL 212
Query: 278 LDENEMFQTTYLKKNKPIMDSNQLFDQILDQNDAPKITIDTKNSKV--SANLDHAKIISE 335
+++ +M +KK K I + ++ + +D PKI D K ++ H I E
Sbjct: 213 IEQLKM----EMKKVKAIGGLTTILEEEEEDDDCPKIMEDLKPWRIEEEKKFKHVDTIGE 268
Query: 336 VLKKYSHLLKGSKNIKLKILNTPNKKKQSTVREQKNSQQKVERHDSN 382
V K H + KL IL+ K + + K+ QQ SN
Sbjct: 269 VHK--FHRSYRERMRKLDILSF-QKSYALGLLQSKSPQQATSTLGSN 312
>At4g26730.1 68417.m03852 hypothetical protein
Length = 208
Score = 28.7 bits (61), Expect = 8.0
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 55 YFEVLERTCEMYEDCLVMPDDLQADVVVPIVNFMYTGQL-EFRLDLLEKLYQTSLIMKM 112
+ E +ERT C+V D+ D V I F + ++ + LE++ +TS++ K+
Sbjct: 133 FVEEMERTVRRGGFCVVAVDECSGDDVRDIARFFHNSKIVDVANVTLERVKRTSILFKL 191
>At3g61780.1 68416.m06931 expressed protein ; expression supported by
MPSS
Length = 1121
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 310 DAPKITIDTKNSKVSANLDHAKIISEVLKKYSHLLKGSKNIKLKILNTPNKKKQSTVRE 368
D P ++ + ++ + + H KI+ E S L+KG N+K K K+ + +++
Sbjct: 1057 DEPLEEVEEEICEIGSKMYHDKIMGERSVDISSLMKGVFNLKTKPTGRRRKRSKQALKD 1115
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 28.7 bits (61), Expect = 8.0
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 31 DLTLQFQDNAQLKVHRLVLNACTEYFEVLERTCEMYEDCLVMPDDLQADVVVPIVNFMYT 90
+L+LQ Q +V V NA + V + E + DD+ VV P++ F+
Sbjct: 233 ELSLQQQFLLVTRVVSRVFNALRKTQVVSNAKDTVLEKIRNINDDIMMAVVFPVIEFIIP 292
Query: 91 GQLEFRLDLL--EKLYQT 106
QL RL + E++ QT
Sbjct: 293 YQLRLRLGMAWPEEIEQT 310
>At2g37380.1 68415.m04584 expressed protein
Length = 321
Score = 28.7 bits (61), Expect = 8.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 131 YAPKHKSSEPTPSTSNKRSYGKAFDNKSACKEKKVYKP-VNINKEIMYRPSSPYIQNKKN 189
++ K K S T R+Y KA +K AC + P I + R +P++ ++
Sbjct: 162 WSKKIKHSSITQKLKASRAYIKALFSKQACSDSSEINPRFKIEPSKVSRKKNPFVNSENP 221
Query: 190 LM 191
L+
Sbjct: 222 LL 223
>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
growth regulating nucleolar protein (Swiss-Prot:Q08288)
[Mus musculus]
Length = 275
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 214 SFCNISYTS-QPLMVHPDTKKRYSKKSGLFNNSSSDSKHTTTLDIIECKKSVDNI 267
S CN TS Q L+ H D KK K ++ + +TTLD + ++ N+
Sbjct: 98 SLCNTKATSQQTLLAHADGKKHRGKAKAF--HARQQQEQSTTLDNKDGSENASNV 150
>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein weak similarity to
spliceosome-associated-protein 114 [Echinococcus
multilocularis] GI:11602721; contains Pfam profile
PF01805: Surp module
Length = 285
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 183 YIQNKKNLMTDPKPTRYELSEEFDGDGVFDSS 214
+++ N TD P R+++ E DG+G DSS
Sbjct: 25 HLEEMLNEWTDEPPIRHDVYPESDGEGADDSS 56
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.7 bits (61), Expect = 8.0
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 227 VHPDTKKRYSKKSGLFNNSSSDSKHTTTLDIIECKKSVDNIFEDNYLE-SGILDENEMFQ 285
VH DT+KR + S + +K T+D + K+V +IF DN + L+ + F+
Sbjct: 59 VHTDTQKRKPEVS----SRGETNKLPRTIDALTYLKAVKDIFHDNKEKYESFLELMKEFK 114
Query: 286 TTYLKKNKPIMDSNQLF----DQILDQN----DAPKITIDTKNSKVSANLDHAKIISEVL 337
+ N I LF D +L N KIT+ + K +D I V
Sbjct: 115 AQTIDTNGVIERIKVLFKGYRDLLLGFNTFLPKGYKITLLPEEEKPKIRVDFKDAIGFVT 174
Query: 338 KKYSHLLKGSKNIK--LKILNTPNKKKQS 364
K + K L ILN K+K+S
Sbjct: 175 KIKTRFGDDEHAYKRFLDILNLYRKEKKS 203
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,544,795
Number of Sequences: 28952
Number of extensions: 470391
Number of successful extensions: 1575
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1564
Number of HSP's gapped (non-prelim): 41
length of query: 433
length of database: 12,070,560
effective HSP length: 83
effective length of query: 350
effective length of database: 9,667,544
effective search space: 3383640400
effective search space used: 3383640400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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