Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   0.42 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   1.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   3.0  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    19   3.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    18   9.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          18   9.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 0.42
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 6   RIKDRQNKT-KHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREV 49
           R KD++  T K   + TH S +       +K RNSEK    LRE+
Sbjct: 376 RRKDKREITRKSTSSSTHTSSQQTSDSFLSK-RNSEKKCGSLREI 419


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 1.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 23  NSVEAAEAFKKTKDRNSEKAEKCLREVIV 51
           NS   +   K+ K   S+KA++   EV+V
Sbjct: 838 NSTPRSTPDKREKSPTSDKAQEADGEVVV 866


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 15  KHIPTHTHNSVEAAEAFKKTKDRNSE 40
           KH+ TH  N  + +       + NS+
Sbjct: 392 KHVKTHNGNGKKGSSDSCSDSEENSQ 417


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 19  THTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCAL 54
           T+  N  +    +  +K RN E        VI+CAL
Sbjct: 253 TYVLNLTDLFLVYGMSKSRNIEGVSFGTNLVILCAL 288


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
          protein.
          Length = 2700

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 9  DRQNKTKHIPTHTHNSVEAAEAFKKTKDRNS 39
          D++  T+ IP+   + VE   +  +  DR++
Sbjct: 18 DQRVVTRTIPSFLRDDVERYPSGPELSDRSA 48


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 5   NRIKDRQNKTKHIPTHTHNSVEAA 28
           N +   QN T  +PT  +  ++ A
Sbjct: 799 NVVFSSQNNTNWVPTSLNRLLDMA 822


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,166
Number of Sequences: 317
Number of extensions: 242
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 57
length of database: 114,650
effective HSP length: 37
effective length of query: 20
effective length of database: 102,921
effective search space:  2058420
effective search space used:  2058420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.4 bits)
S2: 34 (17.8 bits)