GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7NB09 Cluster: Putative uncharacterized protein; n=1; ...    32   2.6  
UniRef50_A2DF87 Cluster: Putative uncharacterized protein; n=1; ...    32   2.6  
UniRef50_Q23G46 Cluster: Putative uncharacterized protein; n=1; ...    31   3.4  
UniRef50_A2F2A5 Cluster: Ubiquitin carrier protein; n=1; Trichom...    31   6.0  
UniRef50_Q9NTJ3 Cluster: Structural maintenance of chromosomes p...    30   7.9  

>UniRef50_Q7NB09 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma gallisepticum|Rep: Putative uncharacterized
           protein - Mycoplasma gallisepticum
          Length = 596

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 4   INRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKC 45
           I R+K R + T+++ TH+  + + AE+     + N EKA+ C
Sbjct: 344 IGRLKFRGSNTQNVLTHSIEAAQIAESIADQLNLNKEKAKVC 385


>UniRef50_A2DF87 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 279

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 5   NRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLRE 48
           ++I + Q+   ++PT T N ++  E  KK + +++EK +K L E
Sbjct: 157 SQISNSQSTRSNLPTDTKNILKTIEELKKERVKDTEKIKKLLVE 200


>UniRef50_Q23G46 Cluster: Putative uncharacterized protein; n=1;
          Tetrahymena thermophila SB210|Rep: Putative
          uncharacterized protein - Tetrahymena thermophila SB210
          Length = 102

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2  KRINRIKDRQ-NKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREV 49
          K+ N+  ++Q NK K+  T+T+ S++     KK ++RN ++  K +++V
Sbjct: 46 KQTNKQTNKQTNKQKNKQTNTNKSIKKQYQTKKEEERNKKQTNKQIKQV 94


>UniRef50_A2F2A5 Cluster: Ubiquitin carrier protein; n=1;
           Trichomonas vaginalis G3|Rep: Ubiquitin carrier protein
           - Trichomonas vaginalis G3
          Length = 162

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 26  EAAEAFKKTKDRNSEKAEKCLREVI 50
           EAAEAF+  + + +EK ++C+RE I
Sbjct: 128 EAAEAFQNNRPKYNEKVQQCVRESI 152


>UniRef50_Q9NTJ3 Cluster: Structural maintenance of chromosomes
           protein 4; n=63; Euteleostomi|Rep: Structural
           maintenance of chromosomes protein 4 - Homo sapiens
           (Human)
          Length = 1288

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 2   KRINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVI 50
           K++ + K++  + K IP  ++N +          ++  EK EK L+EV+
Sbjct: 416 KQLQKDKEKVEEFKSIPAKSNNIINETTTRNNALEKEKEKEEKKLKEVM 464


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,516,701
Number of Sequences: 1657284
Number of extensions: 1276396
Number of successful extensions: 5997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5992
Number of HSP's gapped (non-prelim): 6
length of query: 57
length of database: 575,637,011
effective HSP length: 37
effective length of query: 20
effective length of database: 514,317,503
effective search space: 10286350060
effective search space used: 10286350060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)