GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   0.39 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    24   2.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   2.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    23   4.8  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    23   4.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    23   4.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    23   6.4  

>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5   NRIKDRQNKTKHIPTHTHNSVEAAEAFK-KTKDRNSEKAEKCLREVI 50
           ++I++ Q + +      HN V   + F+ K KD   E+A KCLR+ +
Sbjct: 334 SKIEEGQRELRR-QEEEHNEVWHRKYFEWKDKDEGFEEATKCLRQPV 379


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 13  KTKHIPTHTHNSVEAAEA 30
           K  H PTH HN V + E+
Sbjct: 626 KVIHSPTHVHNLVASEES 643


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 1   MKRINRIKDRQ-NKTKHIPTHTHNSVE 26
           + +  R+  +Q N+ KH+PT+T +SV+
Sbjct: 741 LSKTERLTIQQTNEIKHVPTNTTSSVK 767


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 4    INRIKDRQNKTKHIPTHTHN-----SVEAAEAFKKTKDRNSEKAEKCLREVIVCALS 55
            + R  +   +++ +P  T N     S E  EA++  K     +A+ C R +I  AL+
Sbjct: 972  VRRNAETAERSQALPFITRNLASIKSHELHEAYRLVKANKILEAQICFRSIIYLALT 1028


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 17  IPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVC 52
           +  +  N     E   K   RNS    KC R V +C
Sbjct: 687 VAAYERNEARLNELANKLWQRNSNIKSKCRRVVSLC 722


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 28  AEAFKKTKDRNSEKAEKCLRE 48
           AE  K+ K+R   + EK LRE
Sbjct: 95  AERLKREKERQQREQEKKLRE 115


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 8    KDRQNKTKHIPTHTH 22
            KD++NK K +P+  H
Sbjct: 1172 KDKENKEKKVPSAVH 1186


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,163
Number of Sequences: 5004
Number of extensions: 5992
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 7
length of query: 57
length of database: 2,362,478
effective HSP length: 38
effective length of query: 19
effective length of database: 2,172,326
effective search space: 41274194
effective search space used: 41274194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)