GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0364 + 33392181-33392487,33392919-33392994,33393671-333937...    25   5.9  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    25   7.8  
03_02_0178 + 6195402-6199158,6199438-6200003                           25   7.8  

>03_06_0364 +
           33392181-33392487,33392919-33392994,33393671-33393740,
           33394291-33394320,33394724-33394867,33394954-33395058,
           33395496-33395642,33396994-33397069,33397726-33397814,
           33398178-33398269,33398351-33398390,33398475-33398531
          Length = 410

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 36  DRNSEKAEKCLREVIVCALS 55
           + NSEKA +CL +++  ALS
Sbjct: 249 EENSEKAVQCLNDMVTNALS 268


>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
            15109583-15109806,15111367-15111463,15111556-15111651,
            15112297-15112544,15112632-15112715,15112787-15113236,
            15114880-15115024,15115116-15115217,15115677-15115769,
            15117308-15117349,15119085-15119113,15119210-15119251,
            15119922-15119997,15120764-15120835,15121208-15121326,
            15121428-15121491,15121576-15123009
          Length = 1323

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 7    IKDRQNKTKHIPTHTHNSVEAAEAFKKTKDR 37
            + D ++    +P   HNS++A E    ++DR
Sbjct: 972  VHDERDAHSDLPMSRHNSMKAKEVSNSSRDR 1002


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 25   VEAAEAFKKTKDRNSEKAEKCLREVI 50
            V   EA KK  D NSE  ++C R ++
Sbjct: 1027 VALQEALKKRSDLNSEMLQRCPRVLL 1052


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,222
Number of Sequences: 37544
Number of extensions: 29768
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 3
length of query: 57
length of database: 14,793,348
effective HSP length: 37
effective length of query: 20
effective length of database: 13,404,220
effective search space: 268084400
effective search space used: 268084400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)