GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   31   0.13 
SB_22633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       26   3.7  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               26   4.9  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         26   4.9  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           25   6.4  
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_33626| Best HMM Match : Mov34 (HMM E-Value=0.71)                    25   8.5  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                25   8.5  
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.5  
SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)                      25   8.5  

>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 6   RIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLR 47
           RI D+Q   + +PTH   S + A+AF   ++   ++ ++  R
Sbjct: 387 RIGDKQRSARSLPTHLTESKDVADAFSDIQNMTEQERKRFFR 428


>SB_22633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 6   RIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLR 47
           ++++R+ KT  +  H    +  AEA +KT++  S + EK LR
Sbjct: 198 KLRERREKTLRLNAH----IWRAEAERKTEEEESAEKEKALR 235


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 8    KDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSK 56
            KD+++K +     T +  E+ EA    +D ++E  EK LRE  + ++ K
Sbjct: 1209 KDKKHKKQKEKQKTSDGSESDEAPVPREDDDNENLEKKLREKALLSMRK 1257


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 3   RINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEK 41
           R +   + +N+T  IP +T N +E  E     + R  EK
Sbjct: 757 RASLTNELENRTVKIPENTRNGIEGEEMMPPREKRPIEK 795


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 20 HTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSKR 57
          HT N+V++  AF+  ++R      K  R  I  ALS +
Sbjct: 52 HTKNTVDSWVAFRSIRNRIKSVINKSKRAFITNALSSK 89


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 4   INRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
           +N+++++ N  +    HT NS  + +  K T DR S    K
Sbjct: 434 VNKVENQDNSAEQSGHHTENS-NSVQQTKPTIDRTSNSDSK 473


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 26  EAAEAFKKTKDRNSEKAEKCLREVIVCALSK 56
           E AE+FKK+K+R+ +   + L E  V  ++K
Sbjct: 167 ELAESFKKSKNRDEKMLYQTLSEDFVPEITK 197


>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4   INRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSKR 57
           IN   +++N T +I  +  NS++A E+FK   +  +E+ +   + +I C   K+
Sbjct: 128 INENPNKKNIT-YIVKYLSNSMDAKESFKWLVNEINERKDGGDKTIIYCQTIKQ 180


>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 4    INRIKDRQNKTKHIPTHTHNSVEAAEAFK-KTKDRNSEKA 42
            +N+IK+ +++ K +       +E  E FK K  D  SE++
Sbjct: 1034 VNQIKELEHRLKVVGAEKDQMMETLEEFKNKLSDTQSERS 1073


>SB_33626| Best HMM Match : Mov34 (HMM E-Value=0.71)
          Length = 95

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 2  KRINRIKDRQNKTKHIPTHTHNSVEAAEAFKK 33
          KR     +RQ   + I THT       ++FKK
Sbjct: 54 KRAPESTERQKSRQEIQTHTRTKSTTLQSFKK 85


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 15   KHIPTHT-HN-SVEAAEAFKKTKDRNSEKAEKCLRE 48
            K  P H  HN S E  E+ +K KD    +   CLRE
Sbjct: 1870 KFFPCHRCHNESKECRESLRKAKDAIRLRCLTCLRE 1905


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 11  QNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREV 49
           +NKT H  T  H      E  +K + RNS+++ KC  ++
Sbjct: 143 ENKTTHKRTGKH-----WETLEKKRKRNSDESAKCTSQM 176


>SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)
          Length = 269

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 2   KRINRIKDRQ--NKTKHIPTHTHNSVEAAEAF 31
           KR++++KDRQ   K K + T+   ++  A+AF
Sbjct: 101 KRLDQLKDRQQRRKIKELKTNVERALWFAKAF 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,440
Number of Sequences: 59808
Number of extensions: 47412
Number of successful extensions: 241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 13
length of query: 57
length of database: 16,821,457
effective HSP length: 37
effective length of query: 20
effective length of database: 14,608,561
effective search space: 292171220
effective search space used: 292171220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)