GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    31   0.13 
AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical ...    28   0.90 
AF016417-1|AAK68335.1|  241|Caenorhabditis elegans Hypothetical ...    28   0.90 
AF099925-17|AAO38624.1|  462|Caenorhabditis elegans Calcium bind...    27   2.1  
AF099925-16|AAC69511.1|  482|Caenorhabditis elegans Calcium bind...    27   2.1  
AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium bind...    27   2.1  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    27   2.1  
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    26   2.8  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    26   3.6  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    25   6.4  
Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical p...    25   8.4  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    25   8.4  

>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical
          protein ZK430.5 protein.
          Length = 1276

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 2  KRINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLR 47
          K++N   + QN  K +  H  N    AE FKK+ ++  +K  K LR
Sbjct: 16 KKVNSANNTQNFAKGMGNHVGNGSRQAETFKKSNEKLIDKL-KTLR 60


>AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical
           protein K09C6.8 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 10  RQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSKR 57
           RQN +++I T  HN ++     +    RN  + E   + VI   LS+R
Sbjct: 367 RQNISRNIRTTKHNGLQPLYVQQSRHARNKSEREPLSKNVINTYLSRR 414



 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 10  RQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSKR 57
           RQN +++I T  HN ++     +    RN  + E   + VI   +S+R
Sbjct: 225 RQNISRNIRTTKHNGLQPLYVQQARHARNKSEREPLPKNVINTYMSRR 272


>AF016417-1|AAK68335.1|  241|Caenorhabditis elegans Hypothetical
          protein F17A9.3 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 16 HIPTHTHNSVEAAEAFKKTKDRNSEKAEKC 45
          H+ T+   + E+ E   +  + NSEKAE C
Sbjct: 49 HLNTYNPTTYESTERLFEQNNNNSEKAESC 78


>AF099925-17|AAO38624.1|  462|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform c protein.
          Length = 462

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 3   RINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCL 46
           R   ++D  +K K I T+    V  AEA   TK  +   +E+ L
Sbjct: 326 RARSVRDAMDKMKRIDTNGDGLVSNAEATDSTKKEDDMDSEETL 369


>AF099925-16|AAC69511.1|  482|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform b protein.
          Length = 482

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 3   RINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCL 46
           R   ++D  +K K I T+    V  AEA   TK  +   +E+ L
Sbjct: 326 RARSVRDAMDKMKRIDTNGDGLVSNAEATDSTKKEDDMDSEETL 369


>AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform a protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 3   RINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCL 46
           R   ++D  +K K I T+    V  AEA   TK  +   +E+ L
Sbjct: 326 RARSVRDAMDKMKRIDTNGDGLVSNAEATDSTKKEDDMDSEETL 369


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 3   RINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCL 46
           R   ++D  +K K I T+    V  AEA   TK  +   +E+ L
Sbjct: 326 RARSVRDAMDKMKRIDTNGDGLVSNAEATDSTKKEDDMDSEETL 369


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 10  RQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSKR 57
           RQN +++I T  HN ++     +    RN  + E   + VI   +S+R
Sbjct: 406 RQNISRNIRTTKHNGLQPLYVQQARHARNKSEREPLPKNVINTYMSRR 453


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/42 (26%), Positives = 24/42 (57%)

Query: 8   KDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREV 49
           ++ +NK K +   +     A ++ KK+  +  +K+EK ++EV
Sbjct: 349 EEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKKSEKKVKEV 390


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 8   KDRQNKTKHIPTHTHNSVEAAEAFKKTK 35
           K+  N+TKH+    +N    + A  KTK
Sbjct: 189 KNSNNQTKHLVEDVNNGASTSSAANKTK 216


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
            protein Y113G7C.1 protein.
          Length = 1494

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 5    NRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
            +R ++++ KT+         +E AEA ++ +  N E+A+K
Sbjct: 1017 DREEEKKRKTQDFQDQQDADIERAEADEQRRKMNVERAKK 1056


>Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 7   IKDRQNKTKHIPTHTHNSVEAAEAFKKTKD 36
           IK+++N   H+  HT++ V   E FKK  D
Sbjct: 342 IKEKENFKYHVLPHTYDKV--PEEFKKLVD 369


>Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 7   IKDRQNKTKHIPTHTHNSVEAAEAFKKTKD 36
           IK+++N   H+  HT++ V   E FKK  D
Sbjct: 342 IKEKENFKYHVLPHTYDKV--PEEFKKLVD 369


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 10  RQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALSKR 57
           RQN  ++I T  HN ++     +    RN  + E   + VI   LS+R
Sbjct: 279 RQNIRRNICTTKHNGLQPLYVQQARHARNKLEREPLPKNVINTYLSRR 326


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,523
Number of Sequences: 27539
Number of extensions: 33750
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 15
length of query: 57
length of database: 12,573,161
effective HSP length: 38
effective length of query: 19
effective length of database: 11,526,679
effective search space: 219006901
effective search space used: 219006901
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)