GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
         (57 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   1.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   2.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   2.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   3.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      18   8.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 22  HNSVEAAEAFKKTKDRNSEKAEKCLREVIVCALS 55
           HN +   EA  ++ + +   AE+C     + A S
Sbjct: 728 HNYIMRGEASPRSPNASPSPAEQCASTTTITARS 761


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 18  PTHTHNSVEAAEAFKKTKD 36
           PT  HN+ E A A  K  D
Sbjct: 200 PTRDHNAFEYAMAVMKMCD 218


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
          protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 18 PTHTHNSVEAAEAFKKTKDRNSEK 41
          PT   N +   EAF      N+EK
Sbjct: 14 PTKLRNLIYKTEAFDSLHAGNAEK 37


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 11  QNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVIVC 52
           Q K +     TH  V   E       R    +E CL E I+C
Sbjct: 402 QTKPEGFMIPTHLKVLTIEEKPFVYVREIAFSESCLPEEILC 443


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 22  HNSVEAAEAFKKTKDRNSEKAEKCLREV 49
           H ++E  E      +RN   A    RE+
Sbjct: 309 HCNMENTEGADDASERNPRSAVLAAREI 336


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511
Number of Sequences: 429
Number of extensions: 362
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 57
length of database: 140,377
effective HSP length: 37
effective length of query: 20
effective length of database: 124,504
effective search space:  2490080
effective search space used:  2490080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)