Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001574-TA|BGIBMGA001574-PA|undefined
(57 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 27 1.1
At3g28770.1 68416.m03591 expressed protein 27 2.0
At2g22795.1 68415.m02704 expressed protein 27 2.0
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH... 26 3.5
At3g14670.1 68416.m01856 hypothetical protein 25 4.6
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 25 6.0
At5g11500.1 68418.m01342 expressed protein contains Pfam profile... 25 6.0
At2g28700.1 68415.m03488 MADS-box protein-related contains INTER... 25 6.0
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 25 6.0
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 25 6.0
At4g36890.1 68417.m05230 glycosyl transferase family 43 protein ... 25 8.0
At3g20860.1 68416.m02637 protein kinase family protein contains ... 25 8.0
At3g13690.1 68416.m01729 protein kinase family protein contains ... 25 8.0
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 6 RIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEK 41
R+ ++ T H PTHT S+E E F ++ +K
Sbjct: 782 RLIEKYLNTTHAPTHTEWSLELEEVFALEREGEFDK 817
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 2 KRINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
K + + +D++ K KH + + E + +K +D+NS K ++
Sbjct: 1091 KSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKE 1133
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 11 QNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
Q KT+ T T ++ E++ ++TKD+ +EK EK
Sbjct: 517 QEKTEEKETETKDNEESSSQ-EETKDKENEKIEK 549
>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
(CHX16) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 847
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 19 THTHNSVEAAEAFKKTKDRNSEKAEKCLR-EVIVCALSKR 57
T TH+SV + K N E+ EK + +V+VC S +
Sbjct: 479 TQTHSSVSYKNRKHRRKIENDEEGEKMQQLKVLVCLQSSK 518
>At3g14670.1 68416.m01856 hypothetical protein
Length = 232
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 7 IKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
I+ R + + IPT VE E ++ NSEK EK
Sbjct: 50 IEGRGVEEEQIPTIITTVVEEGEKSDNNEEENSEKDEK 87
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 10 RQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
++N TK V+ EA K KDRN EK E+
Sbjct: 209 KENVTKSEKPRDQEGVKKTEA--KDKDRNKEKKEE 241
>At5g11500.1 68418.m01342 expressed protein contains Pfam profile
PF05670: Domain of unknown function (DUF814)
Length = 215
Score = 25.0 bits (52), Expect = 6.0
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 2 KRINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVI 50
KR+N I +R NKTK T + A + +R EK RE I
Sbjct: 123 KRVNEIVNRLNKTKVERTPDLRAEREAVNAAERAERKQHLREKKKREEI 171
>At2g28700.1 68415.m03488 MADS-box protein-related contains
INTERPRO: IPR002100 MADS-box domain
Length = 329
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1 MKRINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVI 50
+K+ + + Q K K + ++ ++ K++K E E CL+EV+
Sbjct: 68 IKKFEMLPETQKKVKSVNHEEFLNLYISKVEKQSKKLIVENKETCLKEVM 117
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 9 DRQNKTKHIPTHTHNSVEAAEAFKKTKDRN 38
+R N TK+I TH HN ++ + D N
Sbjct: 5 ERSNTTKNINTHHHNPPPSSSSSDLLPDGN 34
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 12 NKTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEKCLREVI 50
N+ I T + +EAA A KK ++ C+R+V+
Sbjct: 963 NEGNSIRTGLEDRMEAANALKKQMWAEAQLDNSCMRDVL 1001
>At4g36890.1 68417.m05230 glycosyl transferase family 43 protein low
similarity to Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase 1, Homo sapiens
[SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
Pfam domain Glycosyltransferase family 43 [PF03360]
Length = 525
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 3 RINRIKDRQNKTKHIPTHTHNSVEAAEAFKKTKDRN 38
+I + K + K+KH P T + + + K ++RN
Sbjct: 490 KIRKPKRKSKKSKHEPRPTDTTTQVYSSSSKHQERN 525
>At3g20860.1 68416.m02637 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 427
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 13 KTKHIPTHTHNSVEAAEAFKKTKDRNSEKAEK 44
KTK T ++ E+ E KK KD +S +K
Sbjct: 303 KTKSAKTPIKHNQESEETEKKNKDTSSSSKDK 334
>At3g13690.1 68416.m01729 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 753
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 14 TKHIPTHTHNSVEAAEAFK-KTKDRNSEKAEKCLRE 48
+++I TH H+S EA E+ K DR K L E
Sbjct: 304 SEYIGTHRHSSQEAEESLLWKNDDRAQISTTKALLE 339
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.124 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,146,672
Number of Sequences: 28952
Number of extensions: 29344
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 14
length of query: 57
length of database: 12,070,560
effective HSP length: 38
effective length of query: 19
effective length of database: 10,970,384
effective search space: 208437296
effective search space used: 208437296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -