GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001573-TA|BGIBMGA001573-PA|IPR001128|Cytochrome P450
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    68   3e-12
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    66   1e-11
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    31   0.37 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    30   0.85 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   3.4  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   7.9  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 16/192 (8%)

Query: 285 ITEHVMAGQVFVFFAAGYVNNTITLTFSLYHLAKDQSIQERLMREIETVLENHNNVLTLE 344
           + EH +AG +     AG   +  T+ + L  L     I E L  E + V+   N  L  +
Sbjct: 273 LKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVV-GENLELKFD 331

Query: 345 AINEMSYLEMIFLETLRMHPTTNTLQRSALEDYTIPGTDIEIEKGTLVLIPPLAFHHDEK 404
              +M  L  +  ETLR+HP  ++  R    D  +PG+ I I     +L  P     +E+
Sbjct: 332 QYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEE 391

Query: 405 IYPEPEKFDPERFSVENHKSRH---------------ACAFLSFGIGPRTCIGIRLAKLQ 449
            +     FDP+R++   ++  +               A  +L FG G   CIG + A + 
Sbjct: 392 YFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMH 451

Query: 450 YKVCMVKFLTKY 461
               + KF+  Y
Sbjct: 452 LSTIISKFVHDY 463


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 295 FVFFAAGYVNNTITLTFSLYHLAKDQSIQERLMREIETVLENHNNV-LTLEAINEMSYLE 353
           F+F +    ++ +T  F L  LA    + +++  E   + +   +V L+L+ + +M+Y  
Sbjct: 316 FLFASQDATSSAMTWLFQL--LADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTR 373

Query: 354 MIFLETLRMHPTTNTLQRSALEDYTIPGTDIEIEKGTLVLIPPLAFHHDEKIYPEPEKFD 413
            +  E LR+ P    +     + + I   D  + K  +V+       HD K+YPEPE F+
Sbjct: 374 AVVKECLRLRPPVLMVPYRVKKAFPIT-PDYTVPKDAMVIPTLYGALHDSKVYPEPETFN 432

Query: 414 PERFSVENHKSRHACAFLSFGIGPRTCIGIRLAKLQYKVCMVK 456
           P+R++      +    ++ FG GP  C+G R A      C+ K
Sbjct: 433 PDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACIGK 475


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 95  IKDYAKFNERGIKFSKEGLGDNLFHADADAWKAVRSHLTP-MFSSGKLKNMVRVLSQTGD 153
           ++++A+   R + FS  G        DA+AWK V   + P  F +    N +   +++  
Sbjct: 165 LEEFARRASRSLSFSMNGTPQRRMTFDAEAWKNVIFKIKPSSFGNASFYNAISAATRS-K 223

Query: 154 RFVDHV 159
           +F DH+
Sbjct: 224 QFDDHL 229


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 40  FLFGNLKESFHRRKHIATVFKEIYDQYPDEKVVGMFRMTSPTLIVRDLDIVKQIM 94
           FL   LKE F +  ++  +F  +  Q P    V  +    P LIV  +  +K+IM
Sbjct: 172 FLPKFLKEQFSKYANLFFLFTAVVQQIPGITPVNRYTTIGPMLIVLSVSGIKEIM 226


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 271 DKLKMKNGSEDFVEITEHVMAGQVFVFFAAGYVNNTITLTFSL-YHLAKDQSIQERLMRE 329
           D + MK GSE +    E  M+GQ+F   +   ++N   + F   Y L +  S++     +
Sbjct: 261 DLVWMKQGSEVYHSTLESKMSGQIFNIGSDDEIDNLSLVKFICDYFLYRKLSLKNLDYSK 320

Query: 330 IETVLE--NHNN---VLTLEAINEMSYLEMIFLET 359
             T ++  N+N+    L  E I  + +   I LET
Sbjct: 321 YITFVQDRNYNDSRYSLNYEKIKSLGWRPQIPLET 355


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 44  NLKESFHRRKHIATVFKEIYDQYPDEKV-----VGMFRMTSPTLIVRDLDIVKQIMIKDY 98
           NL+  +   KH+   F    +++ D+K+     +   RM  P+   + LD +    +  +
Sbjct: 90  NLQHFYEGYKHVDVPFVHYVNEFQDKKLPLRPTLLYGRMHLPS---QHLDAIFATRLSPW 146

Query: 99  AKFNERGIKFSKEGLGDNL 117
             F  +G+   ++G+GDNL
Sbjct: 147 LLFFIQGVNEIEDGVGDNL 165


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,792
Number of Sequences: 5004
Number of extensions: 94865
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 7
length of query: 496
length of database: 2,362,478
effective HSP length: 76
effective length of query: 420
effective length of database: 1,982,174
effective search space: 832513080
effective search space used: 832513080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)