GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001573-TA|BGIBMGA001573-PA|IPR001128|Cytochrome P450
         (496 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...   272   4e-75
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   107   2e-25
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    58   2e-10
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   5.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score =  272 bits (667), Expect = 4e-75
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 13/468 (2%)

Query: 33  IAGPEPEFLFGNLKESFHRRKHIATVFKEIYDQYPDEKVVGMFRMTSPTLIVRDLDIVKQ 92
           + GP+P   FG  K+    +K  A   K+IY++Y +E +VG++   SP L++ D +++K 
Sbjct: 34  VVGPKPVPFFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIKD 93

Query: 93  IMIKDYAKFNERGIK-FSK-EGLGDNLFHADADAWKAVRSHLTPMFSSGKLKNMVRVLSQ 150
           I+I+D++KF  RG+  F + E L  +L + + + W+ +RS L+P+F+SGKLK M  ++ +
Sbjct: 94  ILIRDFSKFANRGLGVFERTEPLSPHLLNLEVERWRPLRSRLSPIFTSGKLKEMFYLIIE 153

Query: 151 TGDRFVDHVTNEVRLRPEQELVSLFLKYNIATIMACSFS--METDINDMQVYEMLNVAVF 208
                  ++   +      E   L  ++    I +C+F   M +  N+   +  +   VF
Sbjct: 154 CSLNLETYLDKLIEKNEPIECRELTARFTTDVIGSCAFGIDMSSMTNENSEFRRMGREVF 213

Query: 209 ENSYIS----ELDMVFPGILRKTNRSIFGPTVNNFCYEIVEFIKNERNGKPANRNDMMDM 264
             ++++    +L    P +       +   T   F   +V      RN     R D ++M
Sbjct: 214 AVNFMNVMRMKLKQFMPRLYDLLGYVMPDRTFAPFFTRVVTDTIKYRNDNNIVRPDFINM 273

Query: 265 LLGVNCDKLKMKNGSEDFVEITEHVMAGQVFVFFAAGYVNNTITLTFSLYHLAKDQSIQE 324
           L+ +  +  K++N     +++T+ ++A Q FVFF AG+  ++ T++ +LY LA +Q +Q+
Sbjct: 274 LMELQKNPQKLEN-----IKLTDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQK 328

Query: 325 RLMREIETVLENHNNVLTLEAINEMSYLEMIFLETLRMHPTTNTLQRSALEDYTIPGTDI 384
           +L  EI T    +N  L  + I EM YL+ +F ETLRM+P  + L R A+ DYT   T I
Sbjct: 329 KLREEINTFCPKNNKELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKI 388

Query: 385 EIEKGTLVLIPPLAFHHDEKIYPEPEKFDPERFSVENHKSRHACAFLSFGIGPRTCIGIR 444
            I K   + IP  A H D  IYP P+ FDPERF  +   SRH   +L FG GPR CIG R
Sbjct: 389 TIPKEMKIWIPAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGAR 448

Query: 445 LAKLQYKVCMVKFLTKYRVAPSTRTKDAYKIDPLRTALEPEGGVYVDI 492
            A  Q KV ++  L  ++V    +T   Y+ DP    L P+ G+Y+ I
Sbjct: 449 FAVYQTKVGLITILRNHKVEVCEKTIIPYEFDPGAFLLSPKDGIYLKI 496


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  107 bits (257), Expect = 2e-25
 Identities = 57/189 (30%), Positives = 90/189 (47%)

Query: 283 VEITEHVMAGQVFVFFAAGYVNNTITLTFSLYHLAKDQSIQERLMREIETVLENHNNVLT 342
           V +T+  +  QV      G+       +F L  +     IQE++++E++ +  + +   T
Sbjct: 331 VLLTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPAT 390

Query: 343 LEAINEMSYLEMIFLETLRMHPTTNTLQRSALEDYTIPGTDIEIEKGTLVLIPPLAFHHD 402
            +   EM YLE   LETLRM+P    + R    D  +   D  I  G  V+I     H  
Sbjct: 391 FQDTLEMKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIGTFKLHRQ 450

Query: 403 EKIYPEPEKFDPERFSVENHKSRHACAFLSFGIGPRTCIGIRLAKLQYKVCMVKFLTKYR 462
             IYP P+ FDP+ F  E   +RH  AF+ F  GPR+C+G + A L+ K+ +   L  +R
Sbjct: 451 PHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFR 510

Query: 463 VAPSTRTKD 471
           V    +  +
Sbjct: 511 VRSDVKESE 519



 Score = 28.7 bits (61), Expect = 0.12
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 107 KFSKEGLGDNLFHADADAWKAVRSHLTPMFSSGKLKNMVRVLSQTGDRFVDHVTNE 162
           +F K  LGD L  +    W+  R  + P F    LK+ + + +      V+ +  E
Sbjct: 116 RFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKE 171


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 58.0 bits (134), Expect = 2e-10
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 297 FFAAGY--VNNTITLTFSLYHLAKDQSIQERLMREIETVLENHNNVLTLEAINEMSYLEM 354
           F AAG   + NT+   F L  + ++ ++Q +L  E   +     + LT++ + +  YL  
Sbjct: 327 FIAAGIHTLGNTLVFLFDL--IGRNPTVQNKLYEETYALAPAGCD-LTIDNLRKAKYLRA 383

Query: 355 IFLETLRMHPTTNTLQRSALEDYTIPGTDIEIEKGTLVLIPPLAFHHDEKIYPEPEKFDP 414
              E+LR+ PTT  + R   E   + G    +  GT+VL+       +E+ + + +K+ P
Sbjct: 384 CITESLRLIPTTTCIARILDEPIELSG--YRLTAGTVVLLHTWIAGLNEENFKDAKKYLP 441

Query: 415 ERFSVENHKSRHACAFLS-FGIGPRTCIGIRLAKLQYKVCMVKFLTKYRV 463
           ER++     + H+   ++ FG G R C G R   L  ++ + K + ++ +
Sbjct: 442 ERWTTPT--TPHSPLLVAPFGAGRRICPGKRFVDLALQLILAKIIREFEI 489


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 148 LSQTGDRFVDHVTNEVRLRPEQELVSLFLKYNIATIMACSFSMETDINDMQV 199
           L QT +  V+ + N+ R +          +YN    M  S S  ++IN  QV
Sbjct: 194 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQV 245


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,575
Number of Sequences: 429
Number of extensions: 5669
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 496
length of database: 140,377
effective HSP length: 60
effective length of query: 436
effective length of database: 114,637
effective search space: 49981732
effective search space used: 49981732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)