GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001572-TA|BGIBMGA001572-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR007502|Helicase-associated region, IPR011709|Protein of unknown
function DUF1605
         (1153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    28   0.50 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   1.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   3.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 554 TPPEESIENALLELKQHGALTSNEKLTALGKALSNLPVEVSLAKALVIGSATLQTHKRDS 613
           +PP +    A    K++G  T+ ++L  L   +S LP+ ++   +++  S+T +  K+++
Sbjct: 528 SPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNA 587


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 451 TSVTIDGIRFVVDSGKVKEMSYDPTSKMQRLKEFWISKASADQRKGRAGRT 501
           TSV       V D   + E+ + P SK  +LK+      +A +RK R G T
Sbjct: 407 TSVIQAATSSVSDDLYLLELGFPPRSKKNKLKKPRQGDGAAVKRKSREGST 457


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
            protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 979  HSKSSYEETQYELSCDISSYMNSEVYYTIKRLLPGDLKILYYGN 1022
            H       TQ   SCD+    N    + +KRL+ GD K + Y N
Sbjct: 119  HELKEKHLTQRINSCDLLKKRNENDPF-LKRLITGDEKWVVYNN 161


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,121
Number of Sequences: 429
Number of extensions: 13562
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 1153
length of database: 140,377
effective HSP length: 65
effective length of query: 1088
effective length of database: 112,492
effective search space: 122391296
effective search space used: 122391296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)