GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001571-TA|BGIBMGA001571-PA|IPR012336|Thioredoxin-like
fold
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   0.97 
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    25   2.2  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   3.9  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    23   9.0  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    23   9.0  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    23   9.0  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 44  EFKKKNPMRTIPILEEGDFYLADR-YPKLSKWINRMNDKEYCR 85
           +F   +P    PI      YL+ + Y  + +W+  ++D+  CR
Sbjct: 165 QFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVVSDRPACR 207


>SPAC15E1.06 |vps29||retromer complex subunit
          Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 56 ILEEGDFYLADRYPKLSK 73
          +L  GDF++ DR PKLS+
Sbjct: 3  VLVIGDFHIPDRAPKLSE 20


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 64  LADRYPKLSKWIN 76
           L +RYP LSKW++
Sbjct: 428 LLERYPNLSKWLS 440


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 63  YLADRYPKLSKWINRMNDKEY 83
           YL ++Y   S+WI+ +N + Y
Sbjct: 464 YLREKYFTPSRWISHLNFQNY 484


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 53   TIPILEEGDFYL-AD--RYPKLSKWINRMNDKEYCRKIN-TPGSEL 94
            TI  LEE   YL AD  + PKL K +  +NDK+   ++  T   EL
Sbjct: 1070 TINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKEL 1115


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 74  WINRMNDKEYCRKIN 88
           W   M +KEYCR+I+
Sbjct: 195 WDLEMAEKEYCRRID 209


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,419
Number of Sequences: 5004
Number of extensions: 23648
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)