Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001571-TA|BGIBMGA001571-PA|IPR012336|Thioredoxin-like
fold
(114 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 29 0.69
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 27 3.7
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 27 3.7
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 3.7
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_10635| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09) 26 8.5
SB_31488| Best HMM Match : PAN (HMM E-Value=1.2) 26 8.5
SB_20818| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_15863| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_20061| Best HMM Match : zf-GRF (HMM E-Value=0.089) 26 8.5
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 29.5 bits (63), Expect = 0.69
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 73 KWINRMNDKEYCRKINTPGSELHVAG 98
+W + + K++CR++N P + LH++G
Sbjct: 239 EWSSSLK-KQFCRRVNDPPTSLHISG 263
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 19 MIVDILGLKVDEQELNPILRQQDTPEFKKKNPMRTIPILE-EGD 61
++V+I LK + Q+LN L+ QD E ++K + LE EG+
Sbjct: 238 LMVEIESLKSEVQQLNSRLQNQDELETERKTLKQDCKALESEGE 281
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 61 DFYLADRYPKLSKWINRMNDKEYCRKINTPGSEL 94
D Y D P L +W+ + + + R++NT G E+
Sbjct: 228 DAYNFDNSPALQEWVTAVAVRIHLRRMNTFGDEV 261
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 87 INTPGSELHVAGLIALMDNTKHNQQSK 113
++T S+ +++ LIAL D T HNQ +K
Sbjct: 2123 LSTGDSQKNMSNLIALTDATGHNQWNK 2149
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 49 NPMRTIPILEEGDFYLADRYPKLSKWINRMNDKE 82
N +TIP+LE+G+ ++ ++PK S W M K+
Sbjct: 383 NRSKTIPLLEKGNLHIT-KFPKRS-WRAIMTSKK 414
>SB_10635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 50 PMRTIPILEEGDFYLADRYPKLSK 73
P +TIP L +G++Y R P L+K
Sbjct: 11 PEKTIPPLTKGNYYRKRRCPPLTK 34
>SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09)
Length = 385
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 68 YPKLSKWINRMNDKEYCRKINTPGSELHV 96
Y +K++ + DK+Y RKI PG ++
Sbjct: 188 YADYAKFMKDILDKDYARKIPEPGKAWYI 216
>SB_31488| Best HMM Match : PAN (HMM E-Value=1.2)
Length = 113
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 84 CRKINTPGSELHVAGLIALMDNTKHNQQSKL 114
C + ++ S H G L+D TKHN +S L
Sbjct: 67 CLETDSGQSVNHKDGSCDLLDTTKHNNESAL 97
>SB_20818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 42 TPEFKKKNPMRTIPILEEGDFYLADRYPKLSKWINRMNDKEYCRKINTPGSELHVAGLI 100
T + NP TI I G L + + ++R D+ TPGS ++V GL+
Sbjct: 11 TVDISSLNPNETIKIFSNGTHNLTT----IRQLVHRAYDQIPGGTFPTPGSSMNVLGLV 65
>SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 42 TPEFKKKNPMRTIPILEEGDFYLADRYPKLSKWINRMNDKEYCRKINTPGSELHVAGLI 100
T + NP TI I G L + + ++R D+ TPGS ++V GL+
Sbjct: 276 TVDISSLNPNETIKIFSNGTHNLTT----IRQLVHRAYDQIPGGTFPTPGSSMNVLGLV 330
>SB_15863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 38 RQQDTPEFKKKNPMRTIPILEEGD 61
+Q+ F ++ +R++P+LEEGD
Sbjct: 827 KQRYNKSFDDRHGVRSLPVLEEGD 850
>SB_20061| Best HMM Match : zf-GRF (HMM E-Value=0.089)
Length = 175
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 30 EQELNPILRQQDTPEFKKKNPMRTIPILEE 59
E+E + + TP+ KKK P+ +P+ +E
Sbjct: 136 EEEAAAVFKVPPTPQKKKKRPVLYLPVGDE 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,130,305
Number of Sequences: 59808
Number of extensions: 163685
Number of successful extensions: 337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 12
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -