Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001571-TA|BGIBMGA001571-PA|IPR012336|Thioredoxin-like
fold
(114 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75956-3|CAJ90494.1| 217|Caenorhabditis elegans Hypothetical pr... 31 0.20
Z75956-2|CAJ90493.1| 523|Caenorhabditis elegans Hypothetical pr... 31 0.20
Z75956-1|CAB00128.1| 628|Caenorhabditis elegans Hypothetical pr... 31 0.20
AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical ... 29 0.60
Z70310-4|CAA94368.1| 347|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z83223-2|CAB05715.1| 130|Caenorhabditis elegans Hypothetical pr... 26 5.6
AF022970-5|AAB69897.1| 129|Caenorhabditis elegans Hypothetical ... 26 5.6
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 26 7.4
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 26 7.4
U80439-3|AAB37640.1| 323|Caenorhabditis elegans Dehydrogenases,... 25 9.8
>Z75956-3|CAJ90494.1| 217|Caenorhabditis elegans Hypothetical
protein R31.2c protein.
Length = 217
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 9 DASPPARAVMMIVDILGLKVDEQELNP-ILRQQDTPEF-----KKKNPMRTIPILEEGDF 62
D SP + + I+ +V+E++ +P +L + P F + P ++EE
Sbjct: 112 DTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEESKQ 171
Query: 63 YLADRYPK-LSKWINRMNDKEYCRKINTPGSELHVAGL 99
R P L+ WI+ N+ + R + + VAGL
Sbjct: 172 VPEGREPSDLATWIH--NNPDVVRNVAAAAAVAGVAGL 207
>Z75956-2|CAJ90493.1| 523|Caenorhabditis elegans Hypothetical
protein R31.2b protein.
Length = 523
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 9 DASPPARAVMMIVDILGLKVDEQELNP-ILRQQDTPEF-----KKKNPMRTIPILEEGDF 62
D SP + + I+ +V+E++ +P +L + P F + P ++EE
Sbjct: 418 DTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEESKQ 477
Query: 63 YLADRYPK-LSKWINRMNDKEYCRKINTPGSELHVAGL 99
R P L+ WI+ N+ + R + + VAGL
Sbjct: 478 VPEGREPSDLATWIH--NNPDVVRNVAAAAAVAGVAGL 513
>Z75956-1|CAB00128.1| 628|Caenorhabditis elegans Hypothetical
protein R31.2a protein.
Length = 628
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 9 DASPPARAVMMIVDILGLKVDEQELNP-ILRQQDTPEF-----KKKNPMRTIPILEEGDF 62
D SP + + I+ +V+E++ +P +L + P F + P ++EE
Sbjct: 523 DTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEESKQ 582
Query: 63 YLADRYPK-LSKWINRMNDKEYCRKINTPGSELHVAGL 99
R P L+ WI+ N+ + R + + VAGL
Sbjct: 583 VPEGREPSDLATWIH--NNPDVVRNVAAAAAVAGVAGL 618
>AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical
protein Y53G8B.1 protein.
Length = 213
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 PILYKTDASPPARAVMMIVDILGLKVDEQELNPILRQQDTPEFKKKNPMRTIPILE 58
PILY + +S + V + + + + Q +N +L +Q EF NP +PIL+
Sbjct: 5 PILYSSWSSGCSSRVRTALALKKIDYEYQPVN-LLNKQKEQEFHGNNPAEKVPILK 59
>Z70310-4|CAA94368.1| 347|Caenorhabditis elegans Hypothetical
protein R11A8.5 protein.
Length = 347
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 5 LYKTDASPPARAVMMIVDILGLKVDEQELNPILRQQDTPEFKKKNPMRTIPILEEGD 61
LY+ + P V +D G + E+NP+ R Q K + +PIL G+
Sbjct: 68 LYQYETCPFCCKVRAFLDYHGFSYEVVEVNPVTRSQ----IKFSTTYKKVPILRSGE 120
>Z83223-2|CAB05715.1| 130|Caenorhabditis elegans Hypothetical
protein E01G4.3 protein.
Length = 130
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 18 MMIVDILGLKVDEQELNPILRQQDTPEFKKK 48
M ++ ++ +E E P + Q+ PEFKK+
Sbjct: 51 MTVLCVINCCAEEDEKKPKRKHQEHPEFKKR 81
>AF022970-5|AAB69897.1| 129|Caenorhabditis elegans Hypothetical
protein F13A2.4 protein.
Length = 129
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 3 PILYKTDASPPARAVMMIVDILGLKVDEQELNPILRQQDTPEFKKKNPMRTIPILEEGDF 62
P L K + AR + D+L K + ++ + +Q+D E K+ + + EE
Sbjct: 31 PFLMKLNLLVEARGITSFEDLLQAKTEVEKELEVGKQKDLAEDKENDVESEERLPEEPKA 90
Query: 63 YLADRYPKLSKWIN 76
A + PK+ + N
Sbjct: 91 KKAKKSPKIKGFPN 104
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 12 PPARAVMMIVDILGLKVDEQELNPILRQQDTPEFKKK 48
PP+ ++ L L+ DEQE R QD E KK
Sbjct: 298 PPSETAAKEIENLRLERDEQESIASRRLQDLEEMNKK 334
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 12 PPARAVMMIVDILGLKVDEQELNPILRQQDTPEFKKK 48
PP+ ++ L L+ DEQE R QD E KK
Sbjct: 298 PPSETAAKEIENLRLERDEQESIASRRLQDLEEMNKK 334
>U80439-3|AAB37640.1| 323|Caenorhabditis elegans Dehydrogenases,
short chain protein1 protein.
Length = 323
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 22 DILGLKVDEQELNPILRQQDTPEFKKKNPMRTIPILEEGDFYLADRYPKLSKWINR 77
++ G V + L P+L + D P+FK + + ++ G + A+ P++SK + +
Sbjct: 118 NVFGHYVVVERLLPLLLKTDRPDFKSR-----VIVVSSGLYRNAEAIPQVSKLLGQ 168
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.135 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,597
Number of Sequences: 27539
Number of extensions: 124936
Number of successful extensions: 264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 10
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -