GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001571-TA|BGIBMGA001571-PA|IPR012336|Thioredoxin-like
fold
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 22  DILGLKVDEQELNPILRQ 39
           DI GL+  + ++NP+L Q
Sbjct: 131 DIAGLRKKKHKVNPLLMQ 148


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 86  KINTPGSELHVAGLIALMDNTKHN 109
           ++  PGS+ +VAG+  L   T ++
Sbjct: 926 RVLVPGSQQNVAGVFNLRPATTYH 949


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 42  TPEFKKKNPMRTIPILEEG 60
           TP F   +PM+T  I+ +G
Sbjct: 562 TPPFTGGDPMKTYNIILKG 580


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,084
Number of Sequences: 429
Number of extensions: 1363
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)