GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001570-TA|BGIBMGA001570-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (318 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   6.8  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/51 (33%), Positives = 21/51 (41%)

Query: 208 VGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAI 258
           +G   N T  M+D+  D         EAL+E   N        G  AGNAI
Sbjct: 61  LGVYPNGTLQMIDEWGDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAI 111


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 129 LHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVS 169
           L+AS + G +    DNL A  +IT WI       K ++ ++
Sbjct: 217 LYASPLDGEWQR--DNLNANSSITHWILSGADPQKLAIGIA 255


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 206 VLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEK 260
           VL  +V+      +DDL    +T+ +  E LR+       A +T  +   N I+K
Sbjct: 445 VLGTEVREFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQK 499


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,542
Number of Sequences: 317
Number of extensions: 2512
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 318
length of database: 114,650
effective HSP length: 57
effective length of query: 261
effective length of database: 96,581
effective search space: 25207641
effective search space used: 25207641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)