Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001570-TA|BGIBMGA001570-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 259 2e-69
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 85 5e-17
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 71 9e-13
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 53 3e-07
05_04_0403 + 20997191-20998816 29 3.7
05_03_0155 - 9002049-9002134,9002825-9004139 29 4.9
01_06_1510 - 37859664-37861319 29 4.9
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 29 6.5
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 28 8.6
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 28 8.6
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 259 bits (635), Expect = 2e-69
Identities = 129/302 (42%), Positives = 197/302 (65%), Gaps = 3/302 (0%)
Query: 4 IKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEI 63
+K+F+G+++ +A+ I + LG++LG+ K+F++ E V++ ESVRG DV++VQ C +
Sbjct: 90 LKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPV 149
Query: 64 NDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADH 123
N+NLMELF+MI+AC+ ASA +T V+P F Y+R D+K + R ITAKL ANL++ AG+D
Sbjct: 150 NENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDR 209
Query: 124 VITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIAD 183
VI D+H++Q G+F+IPVD+++ +P I ++ K V+VSPD GGV R A
Sbjct: 210 VIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPDVGGVVRARAFAK 268
Query: 184 RL-DIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGAN 242
+L D AI+ K RQ N + L+GDVK K AIMVDD+ DT TI A L++ GA
Sbjct: 269 KLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAE 328
Query: 243 KIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRR 302
+YA TH +F+ AIE+++ E ++VTN+I ++ K P+L + ++ ++AE I
Sbjct: 329 AVYACSTHAVFSPPAIERLSGGIFEEVIVTNSILLPEH-KCFPQLTVLSMANLVAETIWH 387
Query: 303 TH 304
H
Sbjct: 388 VH 389
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 85.4 bits (202), Expect = 5e-17
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 74 INACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQ 133
IN + ASA +TAV+P F Y+R D+K + R I AKL+AN+I+ AGA+ V+ DLH+SQ
Sbjct: 124 INIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQ 183
Query: 134 IQGFFNIPVDNLYAE 148
G+F+IPVD++Y +
Sbjct: 184 AMGYFDIPVDHVYGQ 198
Score = 80.2 bits (189), Expect = 2e-15
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 17/121 (14%)
Query: 207 LVGDVKNKTAIMVDDLADTCD----------------TILKGAEALREAGANKIYAFLTH 250
L+GDV+ K A+M+DD+ DT D TI KGAE L + GA ++YA TH
Sbjct: 202 LIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTH 261
Query: 251 GIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVS 310
+F+ AIE++++ + +++TNTIP +++ K P+L + ++ +L E I R H SV
Sbjct: 262 AVFSPPAIERLSSGLFQEVIITNTIPLKED-KSFPQLTILSVANLLGETIWRVHDDCSVG 320
Query: 311 Y 311
+
Sbjct: 321 H 321
Score = 31.1 bits (67), Expect = 1.2
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 4 IKVFTGSSHPDIAKTIVARLGLNLGRATTKK 34
+++F+G+++P +++ I + LGL LG+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 71.3 bits (167), Expect = 9e-13
Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 16/268 (5%)
Query: 3 NIKVFTGSSHPDIAKTIVARLG-LNLGRATTKKFSNKETNVEIGES--VRGEDVYIVQSG 59
N+ +F ++A+ +VAR + L + + F++ N+ I + +RG+ V + S
Sbjct: 98 NVLLFHCEEMRELAEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASF 157
Query: 60 CGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITA----KLLANL 115
+ E +I A S T ++P FP ++ E TA ++L+N+
Sbjct: 158 SSP--SVIFEQLSIIYALPKLFISSFTLILPFFPTGTSERMEDEGDVATAFTLARILSNI 215
Query: 116 -ISVAGADHVITIDLHASQIQGFFNIPVDNLYAE--PAITKWIKENIPEWKSSVMVSPDA 172
IS G ++ D+HA Q + +F V + P + ++E +P+ + + PD
Sbjct: 216 PISRGGPSSLVIFDIHALQERFYFGDSVLPCFESGIPLLKSRLQE-LPDSDNITIAFPDD 274
Query: 173 GGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKG 232
G KR + + +K R+ + + GD + + ++VDDL + T+++
Sbjct: 275 GAWKRFYKQLQHFPM--VVCNKVRE-GEQRIVRIKEGDPRGRHVVIVDDLVQSGGTLIEC 331
Query: 233 AEALREAGANKIYAFLTHGIFAGNAIEK 260
+ L E GA K+ A++THGIF + EK
Sbjct: 332 QKVLAEHGAAKVSAYVTHGIFPNKSWEK 359
>02_05_0511 +
29644266-29644399,29644502-29644913,29645007-29645075,
29645169-29645333,29645771-29645870,29645906-29646081
Length = 351
Score = 53.2 bits (122), Expect = 3e-07
Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 22/281 (7%)
Query: 4 IKVFTGSSHPDIAKTIVARLG-LNLGRATTKKFSNKETNVEIGES--VRGEDVYIVQSGC 60
I +F S ++A + A ++L + F + N+ I + +RG+ V + S
Sbjct: 15 INLFYCSECEELALKVAASSDTIHLQSINWRSFDDGFPNLFINNAHDIRGQHVAFLASFS 74
Query: 61 GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISV-- 118
+ E +I A + T V+P FP ++ E+ TA LA ++S+
Sbjct: 75 SP--SVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVATAFTLARILSMIP 132
Query: 119 ---AGADHVITIDLHASQIQGFFNIPVDNLYAE--PAITKWIKENIPEWKSSVMVSPDAG 173
G V+ D+HA Q + +F V + P + + +++ +P+ + + PD G
Sbjct: 133 KSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPLLLQRLRQ-LPDADNITIAFPDDG 191
Query: 174 GVKRMTGIADRLDID----FAIIHKER--QRANEGDSTVL---VGDVKNKTAIMVDDLAD 224
KR + + F + + + EGD ++ G+ + + ++VDDL
Sbjct: 192 AWKRFHKLLLNFPMTPSFYFGLFDYKVVCAKVREGDKRIVRIKEGNPEGRHVVIVDDLVQ 251
Query: 225 TCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSS 265
+ T+ + + L GA K+ A++TH +F + E+ +++
Sbjct: 252 SGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYERFTHTN 292
>05_04_0403 + 20997191-20998816
Length = 541
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 209 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 268
G ++ K+ ++VDD T K LR+AGA +++ + G+ + I+ S E
Sbjct: 419 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVVGSCLYGIDTPS-EG 477
Query: 269 IVVTNTIPQE 278
+++N + E
Sbjct: 478 ELISNRMDLE 487
>05_03_0155 - 9002049-9002134,9002825-9004139
Length = 466
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 100 KEKSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEP-AITKWIKEN 158
++ R + L +++I V HV+++D+ ++ G + P++ P IT +K
Sbjct: 367 EDTPRIAVIDPLNSSVICVIVGKHVLSVDMEMGKVLG--SSPIEEGEGSPWFITSILKSC 424
Query: 159 I-PEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRAN 200
+ P W +S + P AG G A + ++ +R + N
Sbjct: 425 VLPPWLASSKI-PAAGTSASNKGDAKSKTLSDILVRVDRDKKN 466
>01_06_1510 - 37859664-37861319
Length = 551
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 209 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 268
G ++ K+ ++VDD T K LR+AGA +++ + G+ + I+ S E
Sbjct: 425 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPS-EG 483
Query: 269 IVVTNTIPQE 278
+++N + E
Sbjct: 484 ELISNRMDLE 493
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 124 VITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKS 164
+I++ L A G FN + + Y PA T WI IP ++S
Sbjct: 147 LISVTLFAVHCSGCFNYLIADRYPNPART-WIGAAIPNYRS 186
>08_01_0685 +
6025975-6026074,6026168-6026357,6026963-6027034,
6027187-6027258,6027354-6027425,6027784-6027855,
6027980-6028051,6028134-6028205,6028483-6028554,
6028791-6028865,6028970-6029041,6029134-6029199,
6029267-6029332,6029409-6029453,6029542-6029606,
6029697-6030076,6030455-6030653,6030725-6030883,
6030966-6031084,6031156-6031200,6031226-6031791,
6031871-6032021,6032117-6032454,6033702-6033765,
6034329-6034370,6035572-6035575,6035853-6036039,
6037252-6037323,6037687-6037758,6037867-6037938,
6038019-6038090,6038651-6038725,6038815-6038886,
6038988-6039053,6039163-6039228,6039348-6039392,
6039469-6039533,6039615-6039994,6040070-6040202,
6040354-6040512,6040599-6040717,6040805-6041015,
6041155-6041386,6041469-6041619,6041725-6042084
Length = 1952
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 134 IQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIH 193
IQG++ + L P T ++ +P+ KS V + G+A I F I
Sbjct: 572 IQGYYGPLISALSITPNFTPTVRNGVPKRKSKVGAIAGISIGASVVGLAALFGI-FMFIK 630
Query: 194 KERQRA-NEGDSTVLVG 209
K R+ A +G+ LVG
Sbjct: 631 KRRRLAQQQGELYNLVG 647
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 143 DNLYAEPAITKWIKENIPEWKSSVMVSP 170
+NL P I +W ++N+ +W SSV+++P
Sbjct: 314 ENLGVYPEIEQW-RDNLRQWFSSVLMNP 340
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,078,077
Number of Sequences: 37544
Number of extensions: 305778
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 14
length of query: 318
length of database: 14,793,348
effective HSP length: 82
effective length of query: 236
effective length of database: 11,714,740
effective search space: 2764678640
effective search space used: 2764678640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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