BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001570-TA|BGIBMGA001570-PA|IPR000842|Phosphoribosyl pyrophosphate synthetase, IPR005946|Ribose-phosphate pyrophosphokinase, IPR000836|Phosphoribosyltransferase (318 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 259 2e-69 02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 85 5e-17 01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 71 9e-13 02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 53 3e-07 05_04_0403 + 20997191-20998816 29 3.7 05_03_0155 - 9002049-9002134,9002825-9004139 29 4.9 01_06_1510 - 37859664-37861319 29 4.9 01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 29 6.5 08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 28 8.6 03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 28 8.6 >06_03_0763 - 24405525-24405701,24406209-24406368,24406924-24407005, 24407098-24407167,24407443-24407607,24407731-24407874, 24408467-24408715,24409006-24409221,24409306-24409398 Length = 451 Score = 259 bits (635), Expect = 2e-69 Identities = 129/302 (42%), Positives = 197/302 (65%), Gaps = 3/302 (0%) Query: 4 IKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEI 63 +K+F+G+++ +A+ I + LG++LG+ K+F++ E V++ ESVRG DV++VQ C + Sbjct: 90 LKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPV 149 Query: 64 NDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADH 123 N+NLMELF+MI+AC+ ASA +T V+P F Y+R D+K + R ITAKL ANL++ AG+D Sbjct: 150 NENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDR 209 Query: 124 VITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIAD 183 VI D+H++Q G+F+IPVD+++ +P I ++ K V+VSPD GGV R A Sbjct: 210 VIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPDVGGVVRARAFAK 268 Query: 184 RL-DIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGAN 242 +L D AI+ K RQ N + L+GDVK K AIMVDD+ DT TI A L++ GA Sbjct: 269 KLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAE 328 Query: 243 KIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRR 302 +YA TH +F+ AIE+++ E ++VTN+I ++ K P+L + ++ ++AE I Sbjct: 329 AVYACSTHAVFSPPAIERLSGGIFEEVIVTNSILLPEH-KCFPQLTVLSMANLVAETIWH 387 Query: 303 TH 304 H Sbjct: 388 VH 389 >02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514, 1438627-1438696,1439264-1439407,1439771-1439837, 1439970-1440019,1440386-1440559,1440881-1440934, 1441008-1441112 Length = 330 Score = 85.4 bits (202), Expect = 5e-17 Identities = 38/75 (50%), Positives = 55/75 (73%) Query: 74 INACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQ 133 IN + ASA +TAV+P F Y+R D+K + R I AKL+AN+I+ AGA+ V+ DLH+SQ Sbjct: 124 INIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQ 183 Query: 134 IQGFFNIPVDNLYAE 148 G+F+IPVD++Y + Sbjct: 184 AMGYFDIPVDHVYGQ 198 Score = 80.2 bits (189), Expect = 2e-15 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 17/121 (14%) Query: 207 LVGDVKNKTAIMVDDLADTCD----------------TILKGAEALREAGANKIYAFLTH 250 L+GDV+ K A+M+DD+ DT D TI KGAE L + GA ++YA TH Sbjct: 202 LIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTH 261 Query: 251 GIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVS 310 +F+ AIE++++ + +++TNTIP +++ K P+L + ++ +L E I R H SV Sbjct: 262 AVFSPPAIERLSSGLFQEVIITNTIPLKED-KSFPQLTILSVANLLGETIWRVHDDCSVG 320 Query: 311 Y 311 + Sbjct: 321 H 321 Score = 31.1 bits (67), Expect = 1.2 Identities = 10/31 (32%), Positives = 23/31 (74%) Query: 4 IKVFTGSSHPDIAKTIVARLGLNLGRATTKK 34 +++F+G+++P +++ I + LGL LG+ K+ Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128 >01_06_0553 + 30173964-30174349,30175124-30175439,30175523-30175618, 30175710-30175778,30175878-30176006,30176165-30176264, 30177321-30177454 Length = 409 Score = 71.3 bits (167), Expect = 9e-13 Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 16/268 (5%) Query: 3 NIKVFTGSSHPDIAKTIVARLG-LNLGRATTKKFSNKETNVEIGES--VRGEDVYIVQSG 59 N+ +F ++A+ +VAR + L + + F++ N+ I + +RG+ V + S Sbjct: 98 NVLLFHCEEMRELAEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASF 157 Query: 60 CGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITA----KLLANL 115 + E +I A S T ++P FP ++ E TA ++L+N+ Sbjct: 158 SSP--SVIFEQLSIIYALPKLFISSFTLILPFFPTGTSERMEDEGDVATAFTLARILSNI 215 Query: 116 -ISVAGADHVITIDLHASQIQGFFNIPVDNLYAE--PAITKWIKENIPEWKSSVMVSPDA 172 IS G ++ D+HA Q + +F V + P + ++E +P+ + + PD Sbjct: 216 PISRGGPSSLVIFDIHALQERFYFGDSVLPCFESGIPLLKSRLQE-LPDSDNITIAFPDD 274 Query: 173 GGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKG 232 G KR + + +K R+ + + GD + + ++VDDL + T+++ Sbjct: 275 GAWKRFYKQLQHFPM--VVCNKVRE-GEQRIVRIKEGDPRGRHVVIVDDLVQSGGTLIEC 331 Query: 233 AEALREAGANKIYAFLTHGIFAGNAIEK 260 + L E GA K+ A++THGIF + EK Sbjct: 332 QKVLAEHGAAKVSAYVTHGIFPNKSWEK 359 >02_05_0511 + 29644266-29644399,29644502-29644913,29645007-29645075, 29645169-29645333,29645771-29645870,29645906-29646081 Length = 351 Score = 53.2 bits (122), Expect = 3e-07 Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 22/281 (7%) Query: 4 IKVFTGSSHPDIAKTIVARLG-LNLGRATTKKFSNKETNVEIGES--VRGEDVYIVQSGC 60 I +F S ++A + A ++L + F + N+ I + +RG+ V + S Sbjct: 15 INLFYCSECEELALKVAASSDTIHLQSINWRSFDDGFPNLFINNAHDIRGQHVAFLASFS 74 Query: 61 GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISV-- 118 + E +I A + T V+P FP ++ E+ TA LA ++S+ Sbjct: 75 SP--SVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVATAFTLARILSMIP 132 Query: 119 ---AGADHVITIDLHASQIQGFFNIPVDNLYAE--PAITKWIKENIPEWKSSVMVSPDAG 173 G V+ D+HA Q + +F V + P + + +++ +P+ + + PD G Sbjct: 133 KSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPLLLQRLRQ-LPDADNITIAFPDDG 191 Query: 174 GVKRMTGIADRLDID----FAIIHKER--QRANEGDSTVL---VGDVKNKTAIMVDDLAD 224 KR + + F + + + EGD ++ G+ + + ++VDDL Sbjct: 192 AWKRFHKLLLNFPMTPSFYFGLFDYKVVCAKVREGDKRIVRIKEGNPEGRHVVIVDDLVQ 251 Query: 225 TCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSS 265 + T+ + + L GA K+ A++TH +F + E+ +++ Sbjct: 252 SGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYERFTHTN 292 >05_04_0403 + 20997191-20998816 Length = 541 Score = 29.5 bits (63), Expect = 3.7 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 209 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 268 G ++ K+ ++VDD T K LR+AGA +++ + G+ + I+ S E Sbjct: 419 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVVGSCLYGIDTPS-EG 477 Query: 269 IVVTNTIPQE 278 +++N + E Sbjct: 478 ELISNRMDLE 487 >05_03_0155 - 9002049-9002134,9002825-9004139 Length = 466 Score = 29.1 bits (62), Expect = 4.9 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 100 KEKSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEP-AITKWIKEN 158 ++ R + L +++I V HV+++D+ ++ G + P++ P IT +K Sbjct: 367 EDTPRIAVIDPLNSSVICVIVGKHVLSVDMEMGKVLG--SSPIEEGEGSPWFITSILKSC 424 Query: 159 I-PEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRAN 200 + P W +S + P AG G A + ++ +R + N Sbjct: 425 VLPPWLASSKI-PAAGTSASNKGDAKSKTLSDILVRVDRDKKN 466 >01_06_1510 - 37859664-37861319 Length = 551 Score = 29.1 bits (62), Expect = 4.9 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 209 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 268 G ++ K+ ++VDD T K LR+AGA +++ + G+ + I+ S E Sbjct: 425 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPS-EG 483 Query: 269 IVVTNTIPQE 278 +++N + E Sbjct: 484 ELISNRMDLE 493 >01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617, 6018703-6018735,6018827-6018925,6019042-6019281, 6019747-6020064,6020197-6020254,6020333-6020389, 6020577-6020792,6020885-6021000 Length = 568 Score = 28.7 bits (61), Expect = 6.5 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 124 VITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKS 164 +I++ L A G FN + + Y PA T WI IP ++S Sbjct: 147 LISVTLFAVHCSGCFNYLIADRYPNPART-WIGAAIPNYRS 186 >08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034, 6027187-6027258,6027354-6027425,6027784-6027855, 6027980-6028051,6028134-6028205,6028483-6028554, 6028791-6028865,6028970-6029041,6029134-6029199, 6029267-6029332,6029409-6029453,6029542-6029606, 6029697-6030076,6030455-6030653,6030725-6030883, 6030966-6031084,6031156-6031200,6031226-6031791, 6031871-6032021,6032117-6032454,6033702-6033765, 6034329-6034370,6035572-6035575,6035853-6036039, 6037252-6037323,6037687-6037758,6037867-6037938, 6038019-6038090,6038651-6038725,6038815-6038886, 6038988-6039053,6039163-6039228,6039348-6039392, 6039469-6039533,6039615-6039994,6040070-6040202, 6040354-6040512,6040599-6040717,6040805-6041015, 6041155-6041386,6041469-6041619,6041725-6042084 Length = 1952 Score = 28.3 bits (60), Expect = 8.6 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 134 IQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIH 193 IQG++ + L P T ++ +P+ KS V + G+A I F I Sbjct: 572 IQGYYGPLISALSITPNFTPTVRNGVPKRKSKVGAIAGISIGASVVGLAALFGI-FMFIK 630 Query: 194 KERQRA-NEGDSTVLVG 209 K R+ A +G+ LVG Sbjct: 631 KRRRLAQQQGELYNLVG 647 >03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745, 9966848-9967046,9967246-9967425,9967591-9967967, 9968625-9968765 Length = 649 Score = 28.3 bits (60), Expect = 8.6 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Query: 143 DNLYAEPAITKWIKENIPEWKSSVMVSP 170 +NL P I +W ++N+ +W SSV+++P Sbjct: 314 ENLGVYPEIEQW-RDNLRQWFSSVLMNP 340 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.133 0.377 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,078,077 Number of Sequences: 37544 Number of extensions: 305778 Number of successful extensions: 743 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 730 Number of HSP's gapped (non-prelim): 14 length of query: 318 length of database: 14,793,348 effective HSP length: 82 effective length of query: 236 effective length of database: 11,714,740 effective search space: 2764678640 effective search space used: 2764678640 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 60 (28.3 bits)
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