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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001570-TA|BGIBMGA001570-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...   259   2e-69
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    85   5e-17
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756...    71   9e-13
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450...    53   3e-07
05_04_0403 + 20997191-20998816                                         29   3.7  
05_03_0155 - 9002049-9002134,9002825-9004139                           29   4.9  
01_06_1510 - 37859664-37861319                                         29   4.9  
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601...    29   6.5  
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602...    28   8.6  
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    28   8.6  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score =  259 bits (635), Expect = 2e-69
 Identities = 129/302 (42%), Positives = 197/302 (65%), Gaps = 3/302 (0%)

Query: 4   IKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEI 63
           +K+F+G+++  +A+ I + LG++LG+   K+F++ E  V++ ESVRG DV++VQ  C  +
Sbjct: 90  LKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPV 149

Query: 64  NDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADH 123
           N+NLMELF+MI+AC+ ASA  +T V+P F Y+R D+K + R  ITAKL ANL++ AG+D 
Sbjct: 150 NENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDR 209

Query: 124 VITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIAD 183
           VI  D+H++Q  G+F+IPVD+++ +P I  ++       K  V+VSPD GGV R    A 
Sbjct: 210 VIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPDVGGVVRARAFAK 268

Query: 184 RL-DIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGAN 242
           +L D   AI+ K RQ  N  +   L+GDVK K AIMVDD+ DT  TI   A  L++ GA 
Sbjct: 269 KLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAE 328

Query: 243 KIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRR 302
            +YA  TH +F+  AIE+++    E ++VTN+I   ++ K  P+L  + ++ ++AE I  
Sbjct: 329 AVYACSTHAVFSPPAIERLSGGIFEEVIVTNSILLPEH-KCFPQLTVLSMANLVAETIWH 387

Query: 303 TH 304
            H
Sbjct: 388 VH 389


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 38/75 (50%), Positives = 55/75 (73%)

Query: 74  INACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQ 133
           IN  + ASA  +TAV+P F Y+R D+K + R  I AKL+AN+I+ AGA+ V+  DLH+SQ
Sbjct: 124 INIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQ 183

Query: 134 IQGFFNIPVDNLYAE 148
             G+F+IPVD++Y +
Sbjct: 184 AMGYFDIPVDHVYGQ 198



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 17/121 (14%)

Query: 207 LVGDVKNKTAIMVDDLADTCD----------------TILKGAEALREAGANKIYAFLTH 250
           L+GDV+ K A+M+DD+ DT D                TI KGAE L + GA ++YA  TH
Sbjct: 202 LIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTH 261

Query: 251 GIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVS 310
            +F+  AIE++++   + +++TNTIP +++ K  P+L  + ++ +L E I R H   SV 
Sbjct: 262 AVFSPPAIERLSSGLFQEVIITNTIPLKED-KSFPQLTILSVANLLGETIWRVHDDCSVG 320

Query: 311 Y 311
           +
Sbjct: 321 H 321



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 10/31 (32%), Positives = 23/31 (74%)

Query: 4   IKVFTGSSHPDIAKTIVARLGLNLGRATTKK 34
           +++F+G+++P +++ I + LGL LG+   K+
Sbjct: 98  LRIFSGTANPSLSQEIASYLGLELGKINIKR 128


>01_06_0553 +
           30173964-30174349,30175124-30175439,30175523-30175618,
           30175710-30175778,30175878-30176006,30176165-30176264,
           30177321-30177454
          Length = 409

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 16/268 (5%)

Query: 3   NIKVFTGSSHPDIAKTIVARLG-LNLGRATTKKFSNKETNVEIGES--VRGEDVYIVQSG 59
           N+ +F      ++A+ +VAR   + L   + + F++   N+ I  +  +RG+ V  + S 
Sbjct: 98  NVLLFHCEEMRELAEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASF 157

Query: 60  CGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITA----KLLANL 115
                  + E   +I A      S  T ++P FP    ++ E      TA    ++L+N+
Sbjct: 158 SSP--SVIFEQLSIIYALPKLFISSFTLILPFFPTGTSERMEDEGDVATAFTLARILSNI 215

Query: 116 -ISVAGADHVITIDLHASQIQGFFNIPVDNLYAE--PAITKWIKENIPEWKSSVMVSPDA 172
            IS  G   ++  D+HA Q + +F   V   +    P +   ++E +P+  +  +  PD 
Sbjct: 216 PISRGGPSSLVIFDIHALQERFYFGDSVLPCFESGIPLLKSRLQE-LPDSDNITIAFPDD 274

Query: 173 GGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKG 232
           G  KR         +   + +K R+   +    +  GD + +  ++VDDL  +  T+++ 
Sbjct: 275 GAWKRFYKQLQHFPM--VVCNKVRE-GEQRIVRIKEGDPRGRHVVIVDDLVQSGGTLIEC 331

Query: 233 AEALREAGANKIYAFLTHGIFAGNAIEK 260
            + L E GA K+ A++THGIF   + EK
Sbjct: 332 QKVLAEHGAAKVSAYVTHGIFPNKSWEK 359


>02_05_0511 +
           29644266-29644399,29644502-29644913,29645007-29645075,
           29645169-29645333,29645771-29645870,29645906-29646081
          Length = 351

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 22/281 (7%)

Query: 4   IKVFTGSSHPDIAKTIVARLG-LNLGRATTKKFSNKETNVEIGES--VRGEDVYIVQSGC 60
           I +F  S   ++A  + A    ++L     + F +   N+ I  +  +RG+ V  + S  
Sbjct: 15  INLFYCSECEELALKVAASSDTIHLQSINWRSFDDGFPNLFINNAHDIRGQHVAFLASFS 74

Query: 61  GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISV-- 118
                 + E   +I A      +  T V+P FP    ++ E+     TA  LA ++S+  
Sbjct: 75  SP--SVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVATAFTLARILSMIP 132

Query: 119 ---AGADHVITIDLHASQIQGFFNIPVDNLYAE--PAITKWIKENIPEWKSSVMVSPDAG 173
               G   V+  D+HA Q + +F   V   +    P + + +++ +P+  +  +  PD G
Sbjct: 133 KSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPLLLQRLRQ-LPDADNITIAFPDDG 191

Query: 174 GVKRMTGIADRLDID----FAIIHKER--QRANEGDSTVL---VGDVKNKTAIMVDDLAD 224
             KR   +     +     F +   +    +  EGD  ++    G+ + +  ++VDDL  
Sbjct: 192 AWKRFHKLLLNFPMTPSFYFGLFDYKVVCAKVREGDKRIVRIKEGNPEGRHVVIVDDLVQ 251

Query: 225 TCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSS 265
           +  T+ +  + L   GA K+ A++TH +F   + E+  +++
Sbjct: 252 SGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYERFTHTN 292


>05_04_0403 + 20997191-20998816
          Length = 541

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 209 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 268
           G ++ K+ ++VDD      T  K    LR+AGA +++  +      G+ +  I+  S E 
Sbjct: 419 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVVGSCLYGIDTPS-EG 477

Query: 269 IVVTNTIPQE 278
            +++N +  E
Sbjct: 478 ELISNRMDLE 487


>05_03_0155 - 9002049-9002134,9002825-9004139
          Length = 466

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 100 KEKSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEP-AITKWIKEN 158
           ++  R  +   L +++I V    HV+++D+   ++ G  + P++     P  IT  +K  
Sbjct: 367 EDTPRIAVIDPLNSSVICVIVGKHVLSVDMEMGKVLG--SSPIEEGEGSPWFITSILKSC 424

Query: 159 I-PEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRAN 200
           + P W +S  + P AG      G A    +   ++  +R + N
Sbjct: 425 VLPPWLASSKI-PAAGTSASNKGDAKSKTLSDILVRVDRDKKN 466


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 209 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 268
           G ++ K+ ++VDD      T  K    LR+AGA +++  +      G+ +  I+  S E 
Sbjct: 425 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPS-EG 483

Query: 269 IVVTNTIPQE 278
            +++N +  E
Sbjct: 484 ELISNRMDLE 493


>01_01_0777 -
           6017131-6017243,6018069-6018339,6018432-6018617,
           6018703-6018735,6018827-6018925,6019042-6019281,
           6019747-6020064,6020197-6020254,6020333-6020389,
           6020577-6020792,6020885-6021000
          Length = 568

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 124 VITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKS 164
           +I++ L A    G FN  + + Y  PA T WI   IP ++S
Sbjct: 147 LISVTLFAVHCSGCFNYLIADRYPNPART-WIGAAIPNYRS 186


>08_01_0685 +
           6025975-6026074,6026168-6026357,6026963-6027034,
           6027187-6027258,6027354-6027425,6027784-6027855,
           6027980-6028051,6028134-6028205,6028483-6028554,
           6028791-6028865,6028970-6029041,6029134-6029199,
           6029267-6029332,6029409-6029453,6029542-6029606,
           6029697-6030076,6030455-6030653,6030725-6030883,
           6030966-6031084,6031156-6031200,6031226-6031791,
           6031871-6032021,6032117-6032454,6033702-6033765,
           6034329-6034370,6035572-6035575,6035853-6036039,
           6037252-6037323,6037687-6037758,6037867-6037938,
           6038019-6038090,6038651-6038725,6038815-6038886,
           6038988-6039053,6039163-6039228,6039348-6039392,
           6039469-6039533,6039615-6039994,6040070-6040202,
           6040354-6040512,6040599-6040717,6040805-6041015,
           6041155-6041386,6041469-6041619,6041725-6042084
          Length = 1952

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 134 IQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIH 193
           IQG++   +  L   P  T  ++  +P+ KS V           + G+A    I F  I 
Sbjct: 572 IQGYYGPLISALSITPNFTPTVRNGVPKRKSKVGAIAGISIGASVVGLAALFGI-FMFIK 630

Query: 194 KERQRA-NEGDSTVLVG 209
           K R+ A  +G+   LVG
Sbjct: 631 KRRRLAQQQGELYNLVG 647


>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 143 DNLYAEPAITKWIKENIPEWKSSVMVSP 170
           +NL   P I +W ++N+ +W SSV+++P
Sbjct: 314 ENLGVYPEIEQW-RDNLRQWFSSVLMNP 340


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,078,077
Number of Sequences: 37544
Number of extensions: 305778
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 14
length of query: 318
length of database: 14,793,348
effective HSP length: 82
effective length of query: 236
effective length of database: 11,714,740
effective search space: 2764678640
effective search space used: 2764678640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)

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