GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001570-TA|BGIBMGA001570-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)         321   4e-88
SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)         122   4e-28
SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   7e-12
SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)                   34   0.13 
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_37923| Best HMM Match : rve (HMM E-Value=1.2e-12)                   29   6.6  
SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08)                   29   6.6  
SB_19007| Best HMM Match : rve (HMM E-Value=2e-12)                     29   6.6  
SB_56129| Best HMM Match : rve (HMM E-Value=2.3e-12)                   29   6.6  
SB_52583| Best HMM Match : rve (HMM E-Value=0.00025)                   29   6.6  
SB_43345| Best HMM Match : rve (HMM E-Value=2.8e-11)                   29   6.6  
SB_16295| Best HMM Match : AraC_E_bind (HMM E-Value=4.4)               29   6.6  
SB_4534| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_48508| Best HMM Match : DNA_pol3_theta (HMM E-Value=1.1)            28   8.8  
SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)                   28   8.8  
SB_15661| Best HMM Match : rve (HMM E-Value=3e-10)                     28   8.8  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score =  321 bits (789), Expect = 4e-88
 Identities = 147/192 (76%), Positives = 174/192 (90%)

Query: 42  VEIGESVRGEDVYIVQSGCGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKE 101
           VEI ESVRGEDVYI+QSGCGEINDN+MEL IMINACKIASA RVTAV+PCFPY+RQDKK+
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACKIASAQRVTAVIPCFPYARQDKKD 61

Query: 102 KSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPE 161
           KSRAPI+AKL+AN++SVAGADH+IT+DLHASQIQGFF+IPVDNLYAEPA+ KWIKEN+ +
Sbjct: 62  KSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENVHD 121

Query: 162 WKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDD 221
           W++SV+VSPDAGG KR+T IAD L+  FA+IHKER+ ANE  S VLVGDVK++TAI+VDD
Sbjct: 122 WQNSVIVSPDAGGAKRVTSIADHLNCGFALIHKERKVANEVASMVLVGDVKDRTAILVDD 181

Query: 222 LADTCDTILKGA 233
           +ADTC T+   A
Sbjct: 182 IADTCGTLTLAA 193


>SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)
          Length = 270

 Score =  122 bits (294), Expect = 4e-28
 Identities = 56/111 (50%), Positives = 76/111 (68%)

Query: 207 LVGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSL 266
           +VGDV  K AI+VDD+ D   T +  A  LR+ GA KIY  +THG+ +G+A E I  S +
Sbjct: 157 VVGDVGGKIAIIVDDMIDDATTFVDAARLLRDRGAYKIYVMVTHGLLSGSAPELIEGSEI 216

Query: 267 EAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNVP 317
           + +VVTNT+P +  +  C K++TIDIS +LAEA+RR H  ES+ YLF NVP
Sbjct: 217 DEVVVTNTVPHDSKVARCSKIKTIDISQLLAEAVRRIHNGESMGYLFRNVP 267



 Score =  110 bits (264), Expect = 2e-24
 Identities = 52/116 (44%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 88  VVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYA 147
           V+P  PYS+Q K  K R  I AKL+A+L+  +G   +IT+DLH+ +IQGF++IPVDNL A
Sbjct: 2   VIPYLPYSKQSKMHK-RGAIPAKLMASLLGKSGLTSIITMDLHSKEIQGFYDIPVDNLRA 60

Query: 148 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGD 203
            P I  +I E++P+ +++V+V+ +    +R T  A+RL +  A+IH E Q+ +EGD
Sbjct: 61  SPFIVHYINESVPDCRNAVIVAKNPASAQRATSFAERLRLGIAVIHGE-QKESEGD 115


>SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 68.5 bits (160), Expect = 7e-12
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 9/110 (8%)

Query: 130 HASQIQGFFN--IPVDNLYAE-PAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRL- 185
           +A QIQGFF   +PVDNL A   A+  ++++     K  V++SPDAGGV R       L 
Sbjct: 27  YARQIQGFFGPRVPVDNLEANLVAMNYFVEQKKFPLKDIVVISPDAGGVARAKNFQALLQ 86

Query: 186 -----DIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTIL 230
                D   A+I K+RQ A +  S  +VG+V  K AI++DD+ DT  T++
Sbjct: 87  SVGVKDSSLAMIIKQRQGAGQIGSMHMVGNVAGKQAIIIDDIIDTAGTLV 136



 Score = 34.7 bits (76), Expect = 0.10
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 68  MELFIMINACKIASASRVTAVVPCFPYSRQDKK-EKSRAPITAKLLANLISV 118
           MEL +M++  + ASA R+  V+P + Y+RQ +     R P+   L ANL+++
Sbjct: 1   MELLLMVSTMRRASAKRINVVIPYYGYARQIQGFFGPRVPVD-NLEANLVAM 51


>SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)
          Length = 480

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 235 ALREAGANKIYAFLTHGIFAGNAIEKINNSSL--EAIVVTNTIPQEKNM 281
           AL+ AGA+KI A++TH +F   + ++  +  +  E   +T+++P  K++
Sbjct: 140 ALKAAGASKISAYVTHAVFPQESWKRFTSRDVPFEKFYITDSLPHAKDI 188


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 108 TAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVM 167
           T K++A++    G    I I    S  Q F N     LY +P I  + +EN  +W+ ++ 
Sbjct: 47  TLKVMASMYDPLGMVSPIMITQRHSNPQ-FLN----ELYDQPEIRTYCEENRIQWRFNLE 101

Query: 168 VSPDAGG-VKRMTGIADR 184
            +P  GG  +RM G   R
Sbjct: 102 RAPWWGGFFERMVGTVKR 119


>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 271 VTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHY 305
           +  T+P +KN+ +CP+   +    + AE  R+T++
Sbjct: 57  LATTLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNH 91


>SB_37923| Best HMM Match : rve (HMM E-Value=1.2e-12)
          Length = 283

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 103 LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 146


>SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08)
          Length = 757

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 449 LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 492


>SB_19007| Best HMM Match : rve (HMM E-Value=2e-12)
          Length = 539

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 314 LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 357


>SB_56129| Best HMM Match : rve (HMM E-Value=2.3e-12)
          Length = 308

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 196 LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 239


>SB_52583| Best HMM Match : rve (HMM E-Value=0.00025)
          Length = 287

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 62  LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 105


>SB_43345| Best HMM Match : rve (HMM E-Value=2.8e-11)
          Length = 382

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 302 LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 345


>SB_16295| Best HMM Match : AraC_E_bind (HMM E-Value=4.4)
          Length = 228

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 55 IVQSGCGEINDNLMELFIMINACKIASASRVTAVVPCFP 93
          ++   C E NDN   L I  ++C++A+ ++   +  C P
Sbjct: 37 VLMQACLEHNDNGRVLAICQSSCELANGTKTDLIAVCLP 75


>SB_4534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 4   LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTVKR 47


>SB_48508| Best HMM Match : DNA_pol3_theta (HMM E-Value=1.1)
          Length = 234

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 179 TGIADRLDIDFAIIHKERQRANE 201
           TG+   L+ID  +IH+ER+R ++
Sbjct: 49  TGLVKGLEIDLDVIHRERRRVSQ 71


>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
          Length = 423

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 21  ARLGLNLGRATTKKFSNKETNVEIGESVRGE 51
           ARLGLN+ R  TK F    +N E   +V+GE
Sbjct: 249 ARLGLNINRGKTKVFKTNASN-ETPITVQGE 278


>SB_15661| Best HMM Match : rve (HMM E-Value=3e-10)
          Length = 375

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 142 VDNLYAEPAITKWIKENIPEWKSSVMVSPDAGG-VKRMTGIADR 184
           ++ LY +P I  + +EN  +WK ++  +P  GG  +RM G   R
Sbjct: 150 LNELYDQPDIRTYCEENRIQWKFNLERAPWWGGFFERMVGTEKR 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,363
Number of Sequences: 59808
Number of extensions: 350259
Number of successful extensions: 767
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 19
length of query: 318
length of database: 16,821,457
effective HSP length: 82
effective length of query: 236
effective length of database: 11,917,201
effective search space: 2812459436
effective search space used: 2812459436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)