GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001570-TA|BGIBMGA001570-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (318 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical pr...   484   e-137
U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical pr...   484   e-137
U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical pr...   484   e-137
U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical pr...   473   e-134
Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...   222   2e-58
AL132877-11|CAB60853.1|  214|Caenorhabditis elegans Hypothetical...    34   0.15 
U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical
           protein R151.2b protein.
          Length = 319

 Score =  484 bits (1193), Expect = e-137
 Identities = 226/317 (71%), Positives = 273/317 (86%)

Query: 1   MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 60
           MPNIKVF+GSSHPD++  I  RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS  
Sbjct: 1   MPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAA 60

Query: 61  GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAG 120
           GEINDNLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVAG
Sbjct: 61  GEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAG 120

Query: 121 ADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTG 180
           ADH+IT+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSPDAGG KR+T 
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTS 180

Query: 181 IADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAG 240
           IADRL++DFA+IHKE +RANE +   LVG V+ K AI+VDD+ADTC TI   A+ L EAG
Sbjct: 181 IADRLNVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAG 240

Query: 241 ANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAI 300
           A+K+YAF  HGIF+G A+ ++N S  EA+VVTNTIPQ++NMK C K+Q IDIS++LAEAI
Sbjct: 241 ADKVYAFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEAI 300

Query: 301 RRTHYAESVSYLFTNVP 317
           RRTH  ESVSYLF++VP
Sbjct: 301 RRTHNGESVSYLFSHVP 317


>U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.2a protein.
          Length = 377

 Score =  484 bits (1193), Expect = e-137
 Identities = 226/317 (71%), Positives = 273/317 (86%)

Query: 1   MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 60
           MPNIKVF+GSSHPD++  I  RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS  
Sbjct: 59  MPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAA 118

Query: 61  GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAG 120
           GEINDNLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVAG
Sbjct: 119 GEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAG 178

Query: 121 ADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTG 180
           ADH+IT+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSPDAGG KR+T 
Sbjct: 179 ADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTS 238

Query: 181 IADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAG 240
           IADRL++DFA+IHKE +RANE +   LVG V+ K AI+VDD+ADTC TI   A+ L EAG
Sbjct: 239 IADRLNVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAG 298

Query: 241 ANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAI 300
           A+K+YAF  HGIF+G A+ ++N S  EA+VVTNTIPQ++NMK C K+Q IDIS++LAEAI
Sbjct: 299 ADKVYAFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEAI 358

Query: 301 RRTHYAESVSYLFTNVP 317
           RRTH  ESVSYLF++VP
Sbjct: 359 RRTHNGESVSYLFSHVP 375


>U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical
           protein R151.2d protein.
          Length = 446

 Score =  484 bits (1193), Expect = e-137
 Identities = 226/317 (71%), Positives = 273/317 (86%)

Query: 1   MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 60
           MPNIKVF+GSSHPD++  I  RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS  
Sbjct: 128 MPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAA 187

Query: 61  GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAG 120
           GEINDNLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVAG
Sbjct: 188 GEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAG 247

Query: 121 ADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTG 180
           ADH+IT+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSPDAGG KR+T 
Sbjct: 248 ADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTS 307

Query: 181 IADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAG 240
           IADRL++DFA+IHKE +RANE +   LVG V+ K AI+VDD+ADTC TI   A+ L EAG
Sbjct: 308 IADRLNVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAG 367

Query: 241 ANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAI 300
           A+K+YAF  HGIF+G A+ ++N S  EA+VVTNTIPQ++NMK C K+Q IDIS++LAEAI
Sbjct: 368 ADKVYAFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEAI 427

Query: 301 RRTHYAESVSYLFTNVP 317
           RRTH  ESVSYLF++VP
Sbjct: 428 RRTHNGESVSYLFSHVP 444


>U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical
           protein R151.2c protein.
          Length = 318

 Score =  473 bits (1166), Expect = e-134
 Identities = 221/312 (70%), Positives = 268/312 (85%)

Query: 6   VFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEIND 65
           VF+GSSHPD++  I  RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS  GEIND
Sbjct: 5   VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 64

Query: 66  NLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVI 125
           NLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVAGADH+I
Sbjct: 65  NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 124

Query: 126 TIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRL 185
           T+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSPDAGG KR+T IADRL
Sbjct: 125 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRL 184

Query: 186 DIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIY 245
           ++DFA+IHKE +RANE +   LVG V+ K AI+VDD+ADTC TI   A+ L EAGA+K+Y
Sbjct: 185 NVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVY 244

Query: 246 AFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHY 305
           AF  HGIF+G A+ ++N S  EA+VVTNTIPQ++NMK C K+Q IDIS++LAEAIRRTH 
Sbjct: 245 AFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEAIRRTHN 304

Query: 306 AESVSYLFTNVP 317
            ESVSYLF++VP
Sbjct: 305 GESVSYLFSHVP 316


>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score =  222 bits (543), Expect = 2e-58
 Identities = 122/338 (36%), Positives = 201/338 (59%), Gaps = 28/338 (8%)

Query: 6   VFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEIND 65
           + TG+SHP++AK +  RL + LG AT    +N+ET+V+I +SVRG+ V+I+QSG   +N+
Sbjct: 13  LLTGNSHPELAKMVSERLEIRLGEATVYNKTNRETSVDIKQSVRGKHVFILQSGSKNVNN 72

Query: 66  NLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVI 125
           ++MEL ++I ACK + +  +T ++P  PYS+Q +  + R+ I  KL+A +I  AGA  ++
Sbjct: 73  DVMELLVLIYACKTSMSKTITVIMPYLPYSKQCRMLR-RSSIAMKLVAEMICKAGASRLV 131

Query: 126 TIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRL 185
           ++DL+  +IQGFF+ PVDNL A P   + IK NIP++K++++V+   G + + T  ADRL
Sbjct: 132 SLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVAKSPGVMNKATSYADRL 191

Query: 186 DIDFAIIHKERQRANEGD---------------STVLVGDVKNKTAI-MVDD----LADT 225
            +  A+IH E++   E                   +   + K K  + +V D    +A  
Sbjct: 192 RLGVAVIHGEQKDEEESGLEDGRQSPPPNVTSYDFLPAQESKQKPPLTVVGDVGGRIAIM 251

Query: 226 CDTILKGAEA-------LREAGANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQE 278
            D I+  A++       L+  GA KIY   THG+ + +A   +  S +  ++VTNT+P +
Sbjct: 252 VDDIIDDAQSFVAAAEVLKARGAYKIYVIATHGVLSSDAPALLEASPITEVIVTNTVPHD 311

Query: 279 KNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNV 316
                C K++T+D+S+M+ EAIRR  + ES+  LF +V
Sbjct: 312 LQKMRCHKIKTVDVSLMICEAIRRIFHNESMGQLFRDV 349


>AL132877-11|CAB60853.1|  214|Caenorhabditis elegans Hypothetical
           protein Y105E8B.5 protein.
          Length = 214

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 185 LDIDFAIIHKERQRANEGDSTVL----VGDVKNKTAIMVDDLADTCDTILKGAEALREAG 240
           + +DF  +     + + G   ++    + ++K K+ ++VDD++DT  T+ K    L E G
Sbjct: 90  MTVDFIRVKSYEDQMSTGQIQIMGLSNLDELKGKSVLVVDDISDTGRTLAKLLSTLHETG 149

Query: 241 ANKIYAFL 248
             K +  L
Sbjct: 150 VEKTWTAL 157


>U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical
           protein W03B1.9 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 228 TILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKL 287
           TI+   E +  AGAN ++ F      A ++ ++ N +     VVTN   +E  +KLCP +
Sbjct: 43  TIVFDEEDVVMAGANFVHTF------ANSSFDRANENK----VVTNAEAKEAVLKLCPAV 92

Query: 288 QTIDISVMLA--EAIR 301
           + + I   L+  EA+R
Sbjct: 93  KKLIIQTKLSDFEAVR 108


>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 172 AGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILK 231
           AGG   +T IA  L+IDF  I K  +     D    + + +      V  L +   T+L 
Sbjct: 72  AGGRASLTDIAVALNIDFDHIEKTSRLIVSTDDEFTISNAEIFATEYVHRLRNELRTLLD 131

Query: 232 GAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTI 275
                  A   K +  L+  +     IEK+ +S  + +V  +TI
Sbjct: 132 EQGNQTTAALCKHWN-LSSELLQSLLIEKLGSSDFQGVVDGDTI 174


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,916,713
Number of Sequences: 27539
Number of extensions: 262894
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 9
length of query: 318
length of database: 12,573,161
effective HSP length: 81
effective length of query: 237
effective length of database: 10,342,502
effective search space: 2451172974
effective search space used: 2451172974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)