GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001569-TA|BGIBMGA001569-PA|IPR000322|Glycoside
hydrolase, family 31
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    99   1e-21
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    88   3e-18
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    83   1e-16
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    68   3e-12
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    28   2.7  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    28   2.7  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    27   4.7  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   6.2  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   8.2  

>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 81/283 (28%), Positives = 133/283 (46%), Gaps = 25/283 (8%)

Query: 122 NATRTDGKIYMHNHNEYG----NYYVDSLKEVLGEVPTF--TSSQFL-SGKIIINRQNVS 174
           NAT  DG +  +  N YG        DSL  +   V  F  + S F+ SGK   +    +
Sbjct: 611 NATYHDGTVRYNLFNTYGYDQSRVTYDSLTSIEPNVRPFILSRSTFVGSGKYAAHWLGDN 670

Query: 175 -TTWSGLHREITEAALGGASGNWLWSSPICGDTEHLEINTHNNLCVKWYMAATYMPMIKI 233
            + WS +   I  A      G  +  + +CG       NT   LC +W     ++P  + 
Sbjct: 671 YSLWSNMIFSIPGALTFNMVGLPMVGADVCGFMG----NTDEELCSRWMALGAFLPFYRN 726

Query: 234 HSRDGG--RDPLSFEGTHRTLMINAMRTRISLAPYFYTVL-----QNGPLLRPMFFQYPE 286
           H+  G   ++P  +E    +    AM  R SL PY+YT++     Q  PL+RP+FF++P 
Sbjct: 727 HNSLGSISQEPYRWESVAESSRC-AMNIRYSLLPYWYTLMYEASSQGLPLIRPLFFEFPN 785

Query: 287 IDQLKDTSTQFSVGNDLLIVPNLQPSQSHVHVWLPSES---WYELWSGLKIEGNVGDAVT 343
              L +   QF VG+ LL+ P L+P+  +V    P ++   WY+ +    I     + +T
Sbjct: 786 EPSLANADRQFMVGSALLVTPVLEPNVDYVRGVFPGDNSTIWYDWYDHKVIYRQHNENIT 845

Query: 344 MTTTESDFLTMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIAL 386
           ++   +     +R G+II +QK  +LT  +T+ ++ Y L +AL
Sbjct: 846 LSAPLTHINVAIRGGNIIPMQKP-SLTTHETK-QNPYDLLVAL 886


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 17/220 (7%)

Query: 177 WSGLHREITEAALGGASGNWLWSSPICGDTEHLEINTHNNLCVKWYMAATYMPMIKIHSR 236
           WS +   I+        G  +  + +CG       NT   LC +W     ++P  + H+ 
Sbjct: 677 WSDMVSSISSILTFNLLGIPMVGADVCGYNG----NTDEELCARWMALGAFLPFYRNHNS 732

Query: 237 DGG--RDPLSFEGTHRTLMINAMRTRISLAPYFYTVLQNG-----PLLRPMFFQYPEIDQ 289
            G   ++P  +         +A+  R SL PY+YT++        P++RP+FF++P+   
Sbjct: 733 LGSIPQEPFRWASVAEASR-SAIEIRYSLLPYWYTLMHTASVDGTPMVRPLFFEFPKQIS 791

Query: 290 LKDTSTQFSVGNDLLIVPNLQPSQSHVHVWLPSES---WYELWSGLKIEGNVGDAVTMTT 346
           L     QF +G  LLI P L+P+ +++   +P ++   WY+ ++   I  +  + +TM+ 
Sbjct: 792 LASVDKQFMIGTALLISPALEPNTTYIQGIIPGDNDTIWYDWYNHSVINHDYDENITMSA 851

Query: 347 TESDFLTMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIAL 386
                   VR G+II LQ+    T  ++R  + YSL IA+
Sbjct: 852 PLGYVNIAVRGGNIIPLQQP-GYTTYESR-NNPYSLLIAM 889


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 17/285 (5%)

Query: 116 NHTPKWNATRTDGKIYMHNHNEYGNYYVDSLKEVLGEVPTFTSSQFLSGKIIINRQNVST 175
           NH    NAT  DG       N YG          L ++        LS    +       
Sbjct: 583 NHIVSPNATTHDGTQRYDIFNMYGYGETKVSYAALTQISPNERPFILSRSTFLGSGVYGA 642

Query: 176 TWSGLHREITEAALGGASGNWLWSS---PICG-DTEHLEINTHNNLCVKWYMAATYMPMI 231
            W G +  +        SG  +++    P+ G D      ++   LC +W     + P  
Sbjct: 643 HWLGDNHSLWSNMFFSISGMIVFNMMGIPMVGADVCGFLGDSDEELCSRWMAMGAFSPFY 702

Query: 232 KIHSR--DGGRDPLSFEGTHRTLMINAMRTRISLAPYFYTVL----QNG-PLLRPMFFQY 284
           + H+      ++P ++          AM  R SL PY+YT++    Q+G P LR +F ++
Sbjct: 703 RNHNNIYQISQEPYTWSSVAEASR-RAMYIRYSLLPYWYTIMAKASQDGTPALRALFVEF 761

Query: 285 PEIDQLKDTSTQFSVGNDLLIVPNLQPSQSHVHVWLPSES---WYELWSGLKIEGNVGDA 341
           P    L D   QF VG+ LL+ P L+P+  +V    P ++   WY+ ++  +I     + 
Sbjct: 762 PNDPTLADVDRQFMVGDSLLVTPVLEPNVEYVQGVFPGDNSTVWYDWYNHTEIVRQYNEN 821

Query: 342 VTMTTTESDFLTMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIAL 386
           VT+          +R GS++ +Q+  +LT  ++R ++ ++L +AL
Sbjct: 822 VTLYAPLEHINVAIRGGSVLPMQQP-SLTTYESR-QNPFNLLVAL 864


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)

Query: 135 HNEYGNYYVDS-----LKEVLGEV-PTFTSSQFLSGKIIINRQ---NVSTTWSGLHREIT 185
           HN YG+  ++      +K   G V P   +  F +G   +      +  TTW  L   I 
Sbjct: 554 HNIYGHKCINGTYNGLIKRGEGAVRPFILTRSFFAGTSALAANWIGDTMTTWEHLRGSIP 613

Query: 186 EAALGGASGNWLWSSPICGDTEHLEINTHNNLCVKWYMAATYMPMIKIHSR--DGGRDPL 243
                G SG     + + G       N    L V+WY  A + P  + H+      R+P 
Sbjct: 614 TVLTNGISGMAFSGADVAGFFG----NPDAELFVRWYETAIFYPFFRAHAHIDTKRREPW 669

Query: 244 SFEGTHRTLMINAMRTRISLAPYFYTVLQNG-----PLLRPMFFQYPEIDQLKDTSTQFS 298
            +   + +L+   +R R  L P +YT   N      P+L P F  +PE ++      QF 
Sbjct: 670 LYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYPQFLMHPEDEEGFAIDDQFY 729

Query: 299 VGND-LLIVPNLQPSQSHVHVWL-PSESWYELWSGLKIEGNVGDAVTMTTTESDFLTMVR 356
           VG+  LL+ P   PS   + ++L   E +++L    +  G     V         L  +R
Sbjct: 730 VGDSGLLVKPVTHPSIDKITIYLADDEVYFDLHDHTEYAGKGHQVVPAPLGRVPVL--LR 787

Query: 357 AGSIIVLQKDVTLTAVDTRLRSQYSLTIAL 386
            G+I++ ++ +   A  TR    ++LTIA+
Sbjct: 788 GGNILITRERIRRAAELTR-NDPFTLTIAV 816


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 91  DESDKKVDNMQNYLPYFNKYLEAAFNHTPKWNATRTDGKIYMHNHNEYGNYYVDS 145
           D   K   +++ YL Y+N++     NH     + + D ++Y H H       VDS
Sbjct: 347 DSQSKSRASLERYLHYYNRFA----NHE---QSAKLDHELYEHTHKRMTQMQVDS 394


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 198 WSSPICGDTEHLEINTHNNLCVKWYMAATY 227
           W SPI G++     N HN +C+  Y+  +Y
Sbjct: 414 WMSPIVGNSMVTVANGHNWMCILNYLTDSY 443


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 98  DNMQNYLPYFNKYLEAAFNHTPKWN 122
           D +  YLP+ +K LE  +NH P ++
Sbjct: 130 DRILMYLPHLDKSLEQPYNHLPYYH 154


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 159 SQFLSGKIIINRQNVSTTWSGLHREITEAALGGA 192
           S F S   I+ R   +  W+G    +T  ALG A
Sbjct: 160 SSFQSASDIVRRYGFTALWNGYRYHLTRDALGSA 193


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 140 NYYVDSLKEVLGEVPTFTSSQFLSGKIIINRQNVS 174
           NY  D LKE LG+       Q+ SGK++  R  +S
Sbjct: 80  NYETDKLKERLGKSIDKFQEQWNSGKVVRFRDKLS 114


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,463
Number of Sequences: 5004
Number of extensions: 91875
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 11
length of query: 509
length of database: 2,362,478
effective HSP length: 76
effective length of query: 433
effective length of database: 1,982,174
effective search space: 858281342
effective search space used: 858281342
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)