GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001569-TA|BGIBMGA001569-PA|IPR000322|Glycoside
hydrolase, family 31
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              77   4e-14
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              42   0.001
SB_20487| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.1  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  29   6.7  
SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)          29   8.9  

>SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 388

 Score = 76.6 bits (180), Expect = 4e-14
 Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 32/318 (10%)

Query: 37  MMLQSNSGGFYKGLVKDEKVIYPDYKNISLE--FIQKMWVYN--LPIDGMLLEDTWPLDE 92
           + + +++GG   G V     +YPD+ N S +  + +++  ++  +P DG+ ++    ++E
Sbjct: 77  VFVNASNGGPIVGQVWPGNTVYPDFFNPSTQSYWTKQISQFHDVVPFDGLWID----MNE 132

Query: 93  SDKKVDNMQNYLPYFNKYLEAAFNHTPKWNATRTDGKIYMHNHNEYG--NYYVDSLKEVL 150
               V    +  P   K+    +  TP     +   K    +   YG  +Y V SL    
Sbjct: 133 PSNFVQGSTSGCPN-TKWDNPPY--TPHIIGDKLIDKTLCMSARHYGYRHYDVHSLYGYT 189

Query: 151 GEVPTFTSSQFLSGK--IIINRQNVSTT------WSGLHREITEA---ALGGASGNWLWS 199
             V T ++ + + GK  ++I+R     +      W G ++   E+   ++ G     ++ 
Sbjct: 190 ETVATMSALESIRGKRSMVISRSTFPNSGQHGGHWLGDNQATWESMYLSVPGILNMNMFG 249

Query: 200 SPICG-DTEHLEINTHNNLCVKWYMAATYMPMIKIHSRDGG--RDPLSFEGTHRTLMINA 256
            P+ G D      NT+  LC +W     + P  + H+  G   +DP SF     ++    
Sbjct: 250 IPLVGADICGFLGNTNYELCARWTQLGAFYPFSRNHNTKGATPQDPASFGDKFASMARGV 309

Query: 257 MRTRISLAPYFYTVL-----QNGPLLRPMFFQYPEIDQLKDTSTQFSVGNDLLIVPNLQP 311
           + TR  + PY YT+          + RP+FF++P+  +      QF  G+ LL+ P LQ 
Sbjct: 310 LLTRYRMLPYLYTLFFDAYNMGSTVARPLFFEFPKDAKTLAIDRQFMWGSSLLVTPVLQQ 369

Query: 312 SQSHVHVWLPSESWYELW 329
             S V  + P  +WY ++
Sbjct: 370 GASDVTGYFPDATWYNVY 387


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 215 NNLCVKWYMAATYMPMIKIHSRDGGRDPLSFEGTHRTLMINAMRTRISLAPYFYTVLQN- 273
           N L V+W  AA ++P ++           +     R L + A  +  +L  +   V Q+ 
Sbjct: 563 NELYVRWMQAAVFLPTMQFSFPPWLYGSNTINIAKRLLDLRAKISE-TLILFARQVNQST 621

Query: 274 GPLLRPMFFQYPEIDQLKDTSTQFSVGNDLLIVPNLQP---SQSHVHVWLPSESWYELWS 330
            P++RP+++  P  D      ++F VG+  L+ P L+P   ++    V+LP   W E + 
Sbjct: 622 APIIRPLWWVAPNDDIALTLDSEFLVGDRFLVAPVLRPYSENKGKHKVYLPQGKWKEEFG 681

Query: 331 GLKI 334
             K+
Sbjct: 682 DFKV 685


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 212 NTHNNLCVKWYMAATYMPMIKIHSR--DGGRDPLSFEGTHRTLMINAMRTRISLAPYFYT 269
           N    L  +WY    + P ++ H+      R+P  F+  ++ ++ +A+RTR +L P +YT
Sbjct: 574 NPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYALLPLWYT 633

Query: 270 V 270
           +
Sbjct: 634 L 634


>SB_20487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 246 EGTHRTLMINAMRTRISLAPYFYTVLQNGPLLRPMFFQYPEIDQLKDTSTQFSVGNDLLI 305
           E   RT+ I+ ++ + S   YF++   N  + R     Y +ID L DTST     ++ LI
Sbjct: 47  ETLQRTVRIHGIQEKYSTISYFFSCFHNDEISRDWNIIY-KID-LVDTSTDTFTDSENLI 104

Query: 306 VP 307
            P
Sbjct: 105 CP 106


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 92  ESDKKVDNMQNYLPYFNK--------YLEAAFNHTPKWNATRTDGKIYMHNHNEYGNYYV 143
           ++D++ D+++  L  F K         +E  F+  P+W+    D +   HN NE    YV
Sbjct: 791 DADREQDSLEELLDEFPKDRDELVQERVEQQFHENPEWDVNFEDHEPRDHNRNEVSIRYV 850

Query: 144 D 144
           D
Sbjct: 851 D 851


>SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)
          Length = 535

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 17/72 (23%), Positives = 25/72 (34%)

Query: 166 IIINRQNVSTTWSGLHREITEAALGGASGNWLWSSPICGDTEHLEINTHNNLCVKWYMAA 225
           +I N+    T+W  + R    A L    G   W   +   T+  EIN    + V      
Sbjct: 416 LIPNKAMRGTSWITIDRNRKNARLNNIEGEGAWCPAVVDQTQFFEINLGQMIRVTGVATQ 475

Query: 226 TYMPMIKIHSRD 237
              P+   H  D
Sbjct: 476 GRFPVADCHVLD 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,449,482
Number of Sequences: 59808
Number of extensions: 621973
Number of successful extensions: 1127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 7
length of query: 509
length of database: 16,821,457
effective HSP length: 85
effective length of query: 424
effective length of database: 11,737,777
effective search space: 4976817448
effective search space used: 4976817448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)