Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001568-TA|BGIBMGA001568-PA|IPR000519|P-type trefoil,
IPR000322|Glycoside hydrolase, family 31
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 40 0.003
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 36 0.046
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 4.0
10_01_0042 + 562246-563550 29 5.3
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 29 5.3
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 29 5.3
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 7.0
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 28 9.3
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 39.9 bits (89), Expect = 0.003
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 201 STERMIFNTNRGPLVASQNIWELTFWLTNES-MYGLGEIPLEKTTKVLYN-----HNGGI 254
S+ +FNT+ G LV E + L ++ +YGLGE ++ N + I
Sbjct: 153 SSREALFNTSCGALVFKDQYIEASTSLPRDAALYGLGENTQPGGIRLRPNDPYTIYTTDI 212
Query: 255 SGIPLIFAKSGHSYHGILIE-------AVAPTVITIRKENQIVLRSITSLGVKL------ 301
S I L G H + ++ VA V+ + V TSL K+
Sbjct: 213 SAINLNTDLYGS--HPVYVDLRSRGGHGVAHAVLLLNSNGMDVFYRGTSLTYKVIGGLLD 270
Query: 302 -HLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
+LF GP P ++ +++G M YW FG H CR
Sbjct: 271 FYLFSGPTPLAVVDQYTSMIGRPAPMPYWAFGFHQCR 307
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 35.9 bits (79), Expect = 0.046
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 302 HLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
+ F GP P ++ L+G M YW FG H CR
Sbjct: 22 YFFAGPSPLAVVDQYTQLIGRPAPMPYWSFGFHQCR 57
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 221 WELTFWLTNESMYGLGEIP--LEKTTKVLYNHNGGISGIPLIFAKSGHSYHGILIEAVAP 278
W +T S+ G P L+K T + +NH+ + I + A + S++ + ++ V P
Sbjct: 308 WSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLP 367
Query: 279 TVITIRKENQI 289
+ + +++ + I
Sbjct: 368 SSMPLQEAHDI 378
>10_01_0042 + 562246-563550
Length = 434
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 277 APTVITIRKENQIVLRSITSLGVKLHLFV-GPKPADIMRDVRNLLGVNKRMEYWMFGA 333
+P+V+ +R +++I +++ + +H F+ G KP + DVRN+ + + + + GA
Sbjct: 188 SPSVVPVRLDDKIATQAVPPFTMAVHRFISGLKPVSNL-DVRNVTVSSSLINHIIVGA 244
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 126 VWDEDVV--LSARVATIPFSFQNSLPRIKLSIDEVSKSHLSLNFYNPALVEIPHGNRLEE 183
+W D + ++ V + + + S+ + ++ + S ++ + Y P L+++ N+
Sbjct: 317 LWGYDTIWAVAQAVENVGVNNRTSIQKPSVARNSTSLENMETSVYGPELLKVILRNKFRG 376
Query: 184 KNYFYDVASPELNVVVNSTERMI 206
K+ ++D+++ +L V ST R+I
Sbjct: 377 KSGYFDLSNRQLQV---STFRII 396
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 302 HLFVGPKPADIMRDVRNLLGVNKRMEYWMFG 332
+ F GP P ++ L+G M YW FG
Sbjct: 317 YFFAGPSPLAVVDQYTQLIGRPAPMPYWSFG 347
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 209 TNRGPLVASQNIWELTFWLTNESMYGLGEIP--LEKTTKVLYNHNGGISGIPLIFAKSGH 266
TN + + W +T S+ G P L+K T + +NH+ + I + A +
Sbjct: 292 TNEILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFG 351
Query: 267 SYHGILIEAVAPTVITIRKENQI 289
S++ + ++ V P + +++ + I
Sbjct: 352 SHYFVEVDIVLPCDMPLQEAHDI 374
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 254 ISGIPLIFAKSGHSYHGILIEAVAPTVITIRKENQIVLRSITSLGVKLHLFVGPKPADIM 313
I+GI K+G+S GIL+ V+ +T + + + + V + L V + AD
Sbjct: 171 INGIVNDLQKAGNSVRGILLPGVSHPALTSNQRQSKIRNTRLTTSVPIELKVYGRDADRD 230
Query: 314 RDVRNLL 320
R + LL
Sbjct: 231 RIIEILL 237
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.139 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,604,569
Number of Sequences: 37544
Number of extensions: 368556
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 8
length of query: 337
length of database: 14,793,348
effective HSP length: 82
effective length of query: 255
effective length of database: 11,714,740
effective search space: 2987258700
effective search space used: 2987258700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
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