GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001568-TA|BGIBMGA001568-PA|IPR000519|P-type trefoil,
IPR000322|Glycoside hydrolase, family 31
         (337 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    42   8e-04
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    39   0.006
Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear horm...    29   3.5  
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 196 NVVVNSTERMIFNTNRGPLVASQNIWELTFWLTNESMYGLGE 237
           +V+ NST R IF+T+ G LV S    +L  +L +E+MYG GE
Sbjct: 145 SVIRNSTNRKIFDTSIGGLVFSDQFLQLATYLPSENMYGWGE 186


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 21/162 (12%)

Query: 196 NVVVNSTERMIFNTNRGPLVASQNIWELTFWLTNESMYGLGEIPLEKT----TKVLY--- 248
           +VV  ST R +F+T+ G L+ S    ++  +L +E+MYG GE   +      TK L    
Sbjct: 143 SVVRQSTNRKLFDTSIGGLIFSDQFIQIATYLPSENMYGWGENTHQSLRHDFTKYLTWAM 202

Query: 249 ------NHNGGISGIPL-------IFAKSGHSYHGILIEAVAPTVITIRKENQIVLRSIT 295
                  ++G +  + L       +  +     HG+LI       +T      ++ R+I 
Sbjct: 203 FARDQPPNSGSLDTVNLYGVHPYYMILEPDGKAHGVLIINSNAQEVTTAPGPSLIYRTIG 262

Query: 296 SLGVKLHLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
              + ++ F GP P  + +     +G      YW  G  + R
Sbjct: 263 G-NLDMYFFPGPTPEMVTQQYLKFIGKPFLPAYWALGYQLSR 303


>Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical
           protein C06G8.3b protein.
          Length = 363

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 237 EIPLEKTTKVLYNHNGGISGIP-LIFAKSGHSYHGILIEAVAPTVITIRKENQIVLRSIT 295
           +I  EK T+V    NG  S    L+      + H +++E  AP V++  K N  +L+S+T
Sbjct: 131 DIKKEKVTRVQLIENGSSSSPETLMIPIDSRTRHSLVVEETAPWVVSDEKRN--LLKSLT 188

Query: 296 -SLGVKLH 302
            ++ +  H
Sbjct: 189 FAIAMSFH 196


>AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical
           protein T12B3.4 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 125 RVWDEDVVLSARVATIPFSFQNSLPRIKLSIDEVSKSHLSLNFYNPA--LVEIPHGNRLE 182
           R+ DE +  S+   + P  F+    +I   +  V   H+ ++ ++    L   PH N L 
Sbjct: 188 RINDEHIFPSSTNVSFPKDFRQICKKILTRLFRVFV-HVYIHHFDRIRELGAEPHANTLY 246

Query: 183 EKNYFYD-----VASPELNVVVNSTERMIFNTNRGPLVASQN 219
           +  YF+      V++ EL  + + TER++  +NR   + S N
Sbjct: 247 KHFYFFVTEYGMVSTKELEALKDMTERLLEPSNRRAPIPSAN 288


>AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 134 protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)

Query: 120 SYVMDRVWDEDVVLSARVAT-IPFSFQNSLPRIKLSIDEV 158
           +Y++D   D   +L   V+T IP+ F NSL R+ LS++E+
Sbjct: 136 TYMVDVARD---ILKRDVSTKIPYQFHNSLERLALSLEEI 172


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 299 VKLHLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
           V +  FVGP   D+ R    L GV      +  G H CR
Sbjct: 322 VDVFFFVGPTVKDVQRQNSKLTGVTPLPPLFSIGYHQCR 360


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 299 VKLHLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
           V +  FVGP   D+ R    L GV      +  G H CR
Sbjct: 336 VDVFFFVGPTVKDVQRQNSKLTGVTPLPPLFSIGYHQCR 374


>AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical
           protein R07C3.7 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 231 SMYGLGEIPLEKTTKVLYNHNGGISGIPLIFAKSGHSYHGIL-IEAVAPTVITIRKENQI 289
           S+  L  + +EKT +     N  +  IPLI  K G+ YH +L I    P +      N+I
Sbjct: 262 SLESLESLTIEKTYEF---QNPMVQAIPLIILKYGYGYHTLLRINTGYPRIHVTHSINRI 318


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.139    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,419,499
Number of Sequences: 27539
Number of extensions: 337154
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 12
length of query: 337
length of database: 12,573,161
effective HSP length: 82
effective length of query: 255
effective length of database: 10,314,963
effective search space: 2630315565
effective search space used: 2630315565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)