GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001568-TA|BGIBMGA001568-PA|IPR000519|P-type trefoil,
IPR000322|Glycoside hydrolase, family 31
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t...    43   3e-04
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    35   0.068
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al...    34   0.16 
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    33   0.36 
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    31   1.1  
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi...    29   5.9  
At1g06410.1 68414.m00678 glycosyl transferase family 20 protein ...    29   5.9  

>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
           alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
          Length = 902

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 269 HGILIEAVAPTVITIRKENQIVLRSITSLGVKLHLFVGPKPADIMRDVRNLLGVNKRMEY 328
           HG+L+  +    + ++ E   +  ++    + L++F GP P  +M     L+G    M Y
Sbjct: 252 HGVLL--LNSNGMDVKYEGHRITYNVIGGVIDLYVFAGPSPEMVMNQYTELIGRPAPMPY 309

Query: 329 WMFGAHICR 337
           W FG H CR
Sbjct: 310 WSFGFHQCR 318


>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 302 HLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
           + F GP P +++    +L+G    M YW  G H CR
Sbjct: 261 YFFAGPSPLNVVDQYTSLIGRPAPMPYWSLGFHQCR 296


>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
           alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
           [Arabidopsis thaliana]; contains Pfam profile PF01055:
           Glycosyl hydrolases family 31; identical to cDNA
           alpha-xylosidase precursor (XYL1) partial cds GI:4163996
          Length = 915

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 201 STERMIFNTNRGPLVASQNIWELTFWLTNE-SMYGLGEIPLEKTTKVLYN-----HNGGI 254
           S    +FNT    LV      E++  L  E S+YGLGE       K++ N     +   +
Sbjct: 146 SNHETLFNTTSS-LVFKDQYLEISTSLPKEASLYGLGENSQANGIKLVPNEPYTLYTEDV 204

Query: 255 SGIPLIFAKSG-HSYHGILI----EAVAPTVITIRKENQIVLRSITSLGVKL-------H 302
           S I L     G H  +  L     +A A  V+ +      V     SL  K+       +
Sbjct: 205 SAINLNTDLYGSHPMYMDLRNVGGKAYAHAVLLLNSNGMDVFYRGDSLTYKVIGGVFDFY 264

Query: 303 LFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
              GP P +++     L+G    M YW  G H CR
Sbjct: 265 FIAGPSPLNVVDQYTQLIGRPAPMPYWSLGFHQCR 299


>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 119 FSYVMDRV--WDEDVVLSARVATIPFSFQNSLPRIKLSIDEVSKSHLSLNFYNPALVEIP 176
           F+Y++  V  + +DV+LS   A   ++    L  +      V KS   L+   P      
Sbjct: 73  FAYLVASVQCYSQDVILSRLCAMGFYNLAKQLGSVSYYKQCVKKSKQDLSVTYPENTSPV 132

Query: 177 HGNRLEEKNYFYDVASPELNVVVNSTERMIFNTNRGPLVASQNIWE 222
             + L+E     D+ + E N ++   ERMI      PL +   +WE
Sbjct: 133 ARSMLQELKK--DM-NKEFNTLIRDAERMIAGAKTSPLSSESKVWE 175


>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 299 VKLHLFVGPKPADIMRDVRNLLGVNKRMEYWMFGAHICR 337
           V    FVGP+P D+++   ++ G +   + +  G H CR
Sbjct: 332 VDTFFFVGPEPKDVVKQYASVTGTSAMPQLFATGYHQCR 370


>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
           protein
          Length = 508

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 167 FYNPALVEIPHGNRLEEKNYFYDVASPELNVVVNST 202
           FYN  +  +    RLEE    + V  PEL V +N++
Sbjct: 331 FYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTS 366


>At1g06410.1 68414.m00678 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 851

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 170 PALVEIPHGNRLE-EKNYFYDVASPELNVVVNSTERMIFNTNRGPLVASQNIWELTFWLT 228
           P ++ +P GN  E +++  Y V+S   + V  S++RMI   NR PL A +     +F   
Sbjct: 28  PRVMTVP-GNVSEFDEDQAYSVSSDNPSSV--SSDRMIIVANRLPLKAEKRNGSWSFSWD 84

Query: 229 NESMYGLGEIPLEKTTKVLY 248
            +S+Y   +  L +  ++LY
Sbjct: 85  QDSLYLQLKDGLPEDMEILY 104


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.139    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,978,197
Number of Sequences: 28952
Number of extensions: 315405
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 8
length of query: 337
length of database: 12,070,560
effective HSP length: 81
effective length of query: 256
effective length of database: 9,725,448
effective search space: 2489714688
effective search space used: 2489714688
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)