Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001567-TA|BGIBMGA001567-PA|undefined
(90 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 28 0.25
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 2.3
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub... 25 2.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 3.0
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.0
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 23 5.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 23 7.0
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 23 7.0
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 23 9.2
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 23 9.2
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 27.9 bits (59), Expect = 0.25
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 21 SLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQK 57
SLALQ+L +E ++ LI++ D++ +A L+K
Sbjct: 271 SLALQSLKSVISKELTNFLALIASLDSQIRADASLEK 307
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 33 RESSSLTDLISAFDTKAQAHTELQKV 58
RE+S T ++F T +QA T LQKV
Sbjct: 1950 RETSLYTLTTTSFKTHSQAFTLLQKV 1975
>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 125
Score = 24.6 bits (51), Expect = 2.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 34 ESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKN 68
ES L ++ + Q + + ++TA SGQ D N
Sbjct: 3 ESVLLDEIFTVTSVDKQKYQRVSRITAVSGQNDMN 37
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 3.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 43 SAFDTKAQAHTELQKVTAFSGQFDKNHKPT 72
S F T + H + T+ S F +H PT
Sbjct: 3713 STFSTGSTMHNTVSHATSTSSSFTTSHLPT 3742
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 4.0
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 31 PQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNL 81
P SS+ ++FD+ AH E ++ G D + P+ + + Y ++
Sbjct: 57 PSDGFSSVKWASTSFDSTVTAHKEETPYSSSLGSHDSSSLPSSTNNRYSSV 107
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.4 bits (48), Expect = 5.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 20 LSLALQAL-NGTPQRESSSLTDLISAFDTKAQAHTELQKVTAF 61
L L +QA+ + TP+ SSLT L T + T + K F
Sbjct: 57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKF 99
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 23.0 bits (47), Expect = 7.0
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 21 SLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPT 72
+++L+ N T + SS+ L D EL+KV S + + K T
Sbjct: 1442 TVSLEEFNSTKEELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKDT 1493
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 23.0 bits (47), Expect = 7.0
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 35 SSSLTDLISAFDTKAQAHTELQKVTAF--SGQFDKNHKPTFSKDEYGNLED 83
++ +TD + + +++ + K+ + S + KN KP F K + +L D
Sbjct: 279 ANRITDYVDSDLSESSMKEKQSKIEKYMKSDKSSKNFKPPFQKKSWEDLVD 329
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 45 FDTKAQAHTELQKVTAFSGQFDKNHKPTFS 74
+D Q L + +++G+ DK+ +PT+S
Sbjct: 100 WDRSIQKVVYLYLLASWTGRLDKSLRPTYS 129
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 22.6 bits (46), Expect = 9.2
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 16 ARCALSLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHK 70
A+C + Q + PQ ++TD F+ +TEL V + DK K
Sbjct: 415 AKCRIDFFNQYGDYLPQTLWGAVTDPPLHFEIIEHQYTELPNVKVIPDKNDKKSK 469
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,398
Number of Sequences: 5004
Number of extensions: 12175
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 2,362,478
effective HSP length: 61
effective length of query: 29
effective length of database: 2,057,234
effective search space: 59659786
effective search space used: 59659786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)
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