Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001567-TA|BGIBMGA001567-PA|undefined
(90 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0027 + 6194110-6194541 27 2.4
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 26 4.3
01_06_0476 + 29614228-29614300,29614482-29615425 26 4.3
06_01_0911 - 7031099-7031779,7031896-7032221,7032306-7032318,703... 25 5.6
10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139... 25 7.4
09_06_0063 - 20619616-20619999,20620514-20620576,20620776-20620778 25 7.4
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 25 7.4
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 25 9.8
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599... 25 9.8
04_03_0733 + 19116771-19116957,19117733-19117858,19117946-191180... 25 9.8
>02_02_0027 + 6194110-6194541
Length = 143
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 8 GGRLCLFVARCALSLALQALNGTPQRESSSLTDL 41
G F+A CAL+LAL A + P+R +L +
Sbjct: 25 GAAAAAFLAVCALALALCASHAAPERLRRALASV 58
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 50 QAHTELQKVTAFSGQFDKNHKPTF 73
+ HT + + + +FDKNH PT+
Sbjct: 83 EKHTMEKDIVEYIKEFDKNHGPTW 106
>01_06_0476 + 29614228-29614300,29614482-29615425
Length = 338
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 29 GTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFS 74
GTP++ + T + + FD + E++K G F+ N P++S
Sbjct: 293 GTPKKRRALETYIFAMFDENGKPGDEIEK---HFGLFNPNKSPSYS 335
>06_01_0911 -
7031099-7031779,7031896-7032221,7032306-7032318,
7032402-7032414,7032498-7032510,7032592-7032790
Length = 414
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 16 ARCALSLALQALNGTPQRESSSLTDLISAFDTKAQAHT 53
A CA+ +P SS T+L+S F T+A+A T
Sbjct: 21 ALCAIFTLSLIYFSSPPLIISSTTNLLSQFQTRARART 58
>10_08_0046 +
14411844-14413154,14413753-14413800,14413879-14413992,
14414218-14414496,14414602-14414715,14415210-14415282,
14415973-14416073
Length = 679
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 12 CLFVARCALSLALQALNGT 30
C + +C L+L L A+NGT
Sbjct: 648 CASIGKCDLTLTLTAVNGT 666
>09_06_0063 -
20619616-20619999,20620514-20620576,20620776-20620778
Length = 149
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 18 CALSLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQKV 58
C L A Q+++ E +LTD I DT+ A +++V
Sbjct: 58 CLLITASQSVSNYRPEEGDTLTDRIGMADTRRLAAAVVRRV 98
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 8 GGRLCLFVARC-ALSLALQALNGTPQRESSSLTDLISA 44
G L ++C +L+LAL N PQ+ + T +I+A
Sbjct: 340 GNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITA 377
>08_02_0456 - 17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 69 HKPTFSKDEYGNLED 83
++PTF+K+EYG+ D
Sbjct: 1063 NQPTFTKEEYGDFVD 1077
>08_01_0683 +
5991905-5992055,5993262-5993451,5993701-5993772,
5994016-5994084,5994189-5994260,5994440-5994511,
5994623-5994694,5994777-5994848,5995276-5995347,
5995452-5995526,5995929-5996005,5996417-5996781,
5996872-5997070,5997151-5997309,5997391-5997509,
5997624-5997641,5997701-5997851,5997959-5998190,
5998272-5998422,5998517-5998876
Length = 915
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 20 LSLALQALNGTPQRESSSLTDLIS 43
LSLA+ L+G +E +LT+LIS
Sbjct: 161 LSLAINPLSGPLPKELGNLTNLIS 184
>04_03_0733 +
19116771-19116957,19117733-19117858,19117946-19118061,
19118395-19118483,19118692-19118743,19119361-19119829,
19120985-19121367,19121450-19122132,19122561-19123152,
19123255-19123638,19124106-19124114
Length = 1029
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 37 SLTDLISAFDTKAQAHTELQKV-TAFSGQFDKNHKPTFSKDEYGNLED 83
SL D ++A AQA +Q AFS + + K KDEYG ++
Sbjct: 799 SLKDSLAAVRNAAQAAARIQNAFRAFSFR-KRQQKTARLKDEYGMTQE 845
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,398
Number of Sequences: 37544
Number of extensions: 70542
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 14,793,348
effective HSP length: 69
effective length of query: 21
effective length of database: 12,202,812
effective search space: 256259052
effective search space used: 256259052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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