Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001567-TA|BGIBMGA001567-PA|undefined
(90 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_31942| Best HMM Match : TolA (HMM E-Value=0.36) 28 1.2
SB_47900| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62) 27 2.1
SB_7032| Best HMM Match : IncA (HMM E-Value=0.46) 27 2.8
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31) 26 3.7
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 26 3.7
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 26 3.7
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 26 4.9
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.5
SB_11737| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0) 25 6.5
SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33) 25 8.6
SB_44636| Best HMM Match : IncA (HMM E-Value=0.32) 25 8.6
>SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 52 HTELQKVTAFSGQFDKNHKPTFSKDEYGNLEDFAIFV 88
H + ++ F Q KNH P +G+LED+ + V
Sbjct: 280 HLLIWGLSVFESQSSKNHLPHPKGSLFGSLEDYDVLV 316
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 45 FDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLE 82
FD Q ++ + SG D T S+D+YGNLE
Sbjct: 760 FDNILQYINKVYVIKTKSGLLDSASLSTVSEDDYGNLE 797
>SB_31942| Best HMM Match : TolA (HMM E-Value=0.36)
Length = 589
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 21 SLALQALNGT-PQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQF 65
S ALQA NG P ++ L+ +A D KA A + +Q+V+ + Q+
Sbjct: 243 SRALQAANGLGPDNAAAVLSVKRAADDAKANASSAVQRVSNLTKQY 288
>SB_47900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 527
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 19 ALSLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEY 78
AL L ++ +G ++ ++T L + + +L K T F ++ + FS DE+
Sbjct: 161 ALKLQIRQKSGKEDEKNVNITKLRET--VREEILKDLMKFTEFVKRYPYYSRFRFSADEH 218
Query: 79 GNLE 82
GN++
Sbjct: 219 GNVQ 222
>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
Length = 1110
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 15 VARCALSLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDK 67
V C LS Q LN + +L D ISA D K + + A QFD+
Sbjct: 137 VLHCLLSSQHQQLNWPQMVDGITLLDWISAQDNKYSLQDMVTQCQAAVEQFDQ 189
>SB_7032| Best HMM Match : IncA (HMM E-Value=0.46)
Length = 223
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 28 NGTPQRESSSLTDLISAFDT-KAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLE 82
N E S + + + F+ K Q + K T F+ ++ + FS DE+GN++
Sbjct: 142 NKISDEEFSLILNEVDKFEALKLQIRQKSMKFTEFAKRYPYYSRFRFSADEHGNVQ 197
>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
Length = 353
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 30 TPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQ 64
TPQ SSS T IS D + QA T+ + T+ S Q
Sbjct: 279 TPQSSSSSSTSNISGVDQQKQA-TQQESQTSVSPQ 312
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 26 ALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLED 83
+LN T +S L L+S+ D A H E + + + +E+G LED
Sbjct: 1601 SLNQTEDSKSEKLLKLVSSDDPDANVHVEKYREMGYD-HLTVYPRELEKIEEFGGLED 1657
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 30 TPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQ 64
TPQ SSS T IS D + QA T+ + T+ S Q
Sbjct: 557 TPQSSSSSSTSNISGVDQQKQA-TQQESQTSVSPQ 590
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 66 DKNHKPTFSKDEYGNLEDF 84
DK K FSKD+ GN E+F
Sbjct: 188 DKKGKKKFSKDDIGNPENF 206
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 30 TPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDE 77
T ++ ++ D +S+ +A + +E T +FD + KPT +E
Sbjct: 4688 TSSEDAPTMDDKLSSLMERADSSSESSDDTFTCSEFDFDEKPTSKAEE 4735
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 19 ALSLALQ-ALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDE 77
+LS ALQ A+ +R LT FD + + + K+TA + DK +K
Sbjct: 1080 SLSSALQQAVAARTKRMDKRLTQCSDEFDQRTRKASAPAKITARTRAMDKVRSDIMAKLN 1139
Query: 78 YGNLED 83
NL +
Sbjct: 1140 DDNLHE 1145
>SB_11737| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)
Length = 702
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 15 VARCALSLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQ 56
+A+ L A L P S + FDTK Q H E +
Sbjct: 449 IAKLNLEFAASVLQDVPANWSRIAEKMFIPFDTKRQYHPEYE 490
>SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)
Length = 708
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 28 NGTPQRESSSLTDLISAFDTKAQAHTELQKVTA 60
NGT + ++S T IS TKAQ+ LQ+ ++
Sbjct: 297 NGTKKERANSKTKSISPRLTKAQSLESLQRTSS 329
>SB_44636| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 554
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 28 NGTPQRESSSLTDLISAFDT-KAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLE 82
N E S + + + F+ K Q + K T F ++ + FS DE+GN++
Sbjct: 142 NKISDEEFSLILNELDKFEALKLQIRQKSMKFTEFVKRYPYYSRFRFSADEHGNVQ 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,501
Number of Sequences: 59808
Number of extensions: 80453
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 16
length of query: 90
length of database: 16,821,457
effective HSP length: 67
effective length of query: 23
effective length of database: 12,814,321
effective search space: 294729383
effective search space used: 294729383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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