GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001567-TA|BGIBMGA001567-PA|undefined
         (90 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.             30   0.98 
AL133320-3|CAI21783.1|  281|Homo sapiens chromosome 1 open readi...    28   5.2  

>AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.
          Length = 2847

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 20   LSLALQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPT 72
            L  A   L   P  E  S +DLIS+   K  AH +  K +  +GQ  +   P+
Sbjct: 1222 LPKAASELGQQPMTELDSSSDLISSPGKKGAAHPDPSKTSVDTGQVSRPENPS 1274


>AL133320-3|CAI21783.1|  281|Homo sapiens chromosome 1 open reading
           frame 141 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 33  RESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLE 82
           R S   TD    F+ ++ AH + +  T F+ Q +K  KP    D  G LE
Sbjct: 157 RRSLGSTDFSPMFNIQSNAHKKEKDSTLFTAQIEK--KPRKPLDSVGLLE 204


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,486
Number of Sequences: 224733
Number of extensions: 357418
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 73,234,838
effective HSP length: 68
effective length of query: 22
effective length of database: 57,952,994
effective search space: 1274965868
effective search space used: 1274965868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)