GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001567-TA|BGIBMGA001567-PA|undefined
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   4.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   5.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          20   5.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   7.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   9.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   9.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 65  FDKNHKPTFSKDEYG 79
           F K   P F KD+YG
Sbjct: 263 FRKRTLPHFIKDDYG 277


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 50  QAHTELQKVTAFSGQFDKNHKP 71
           Q+H + +     + Q+  NHKP
Sbjct: 476 QSHAKAKNTMIKARQYRLNHKP 497


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 50  QAHTELQKVTAFSGQFDKNHKP 71
           Q+H + +     + Q+  NHKP
Sbjct: 102 QSHAKAKNTMIKARQYRLNHKP 123


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 46  DTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLED 83
           D+  +   E+ + +  +G   +NHK     DE    ++
Sbjct: 293 DSPIEPEIEISQNSVSTGSDKENHKTEEPNDEVATYDN 330


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 30  TPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNLEDFAIFVI 89
           TP    S L  + S FDT  + +   +  T        +  P    D    + D A+ ++
Sbjct: 441 TPMEVVSMLNAMYSLFDTLTERNRVYKVETIGDAYMVVSGAPVKENDHADRVCDMALDMV 500


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
          protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 29 GTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQ 64
          GT Q++ + L +LI   +     H    + T  SGQ
Sbjct: 8  GTCQKKPTKLRNLIYKTEAFDSLHAGNAEKTLCSGQ 43


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,645
Number of Sequences: 429
Number of extensions: 665
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)