Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001567-TA|BGIBMGA001567-PA|undefined
(90 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi... 27 1.6
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ... 27 1.6
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate... 27 1.6
At3g54160.1 68416.m05987 syntaxin-related family protein contain... 26 2.8
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 26 3.7
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 26 3.7
At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein sim... 26 3.7
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 26 3.7
At2g38630.1 68415.m04745 expressed protein 25 4.9
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 25 4.9
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 25 4.9
At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing p... 25 4.9
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ... 25 4.9
At3g11560.3 68416.m01412 expressed protein 25 8.5
At3g11560.2 68416.m01411 expressed protein 25 8.5
At3g11560.1 68416.m01410 expressed protein 25 8.5
At1g69650.1 68414.m08015 meprin and TRAF homology domain-contain... 25 8.5
At1g22870.1 68414.m02855 protein kinase family protein contains ... 25 8.5
>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
protein
Length = 972
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 34 ESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKN 68
+S SL + FD + Q E++K +A S ++D N
Sbjct: 152 DSQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDAN 186
>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
protein, putative (SR1) identical to partial sequence of
ethylene-induced calmodulin-binding protein GI:11545505
from [Arabidopsis thaliana]; contains Pfam profiles
PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
motif, and PF00023: Ankyrin repeat
Length = 1032
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 31 PQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQ-FDKNHKPTFSKDEYGNLEDFAIFVI 89
P SSSLTD ++A QA + +V F Q F K F + G E+ A+ ++
Sbjct: 779 PSPSSSSLTDSLTAVRNATQAAARIHQV--FRAQSFQKKQLKEFGDKKLGMSEERALSML 836
>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
similar to menaquinone biosynthesis protein menD
[SP|P17109][E. coli] ; Pfam HMM hit:
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
acid synthase / 2-oxoglutarate decarboxylase
Length = 894
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 24 LQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYG 79
LQAL+G RE S S+ AH + +T+ S F N P D YG
Sbjct: 712 LQALDGAIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYG 767
>At3g54160.1 68416.m05987 syntaxin-related family protein contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to At1g48390, At1g47920
(syntaxin SYP81), At5g41830, At3g44180,At1g56610,
At3g58890, At1g48390, At3g59270 [Arabidopsis thaliana]
Length = 434
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 21 SLALQALNGTPQR--ESSSLTDLISAFDTKAQAHTELQKVTAFSG 63
+L +QAL+ T + +++ D + + + H E+ K+T F G
Sbjct: 327 TLTIQALHYTTNHYGDENTVCDCLEVYSFLSSCHIEVLKITQFKG 371
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 23 ALQALNGTPQRESSSLTDLISAFDTKAQAHT-ELQKVTAFSGQFDKNHKPT 72
A++++NG + E S++ ++ DT+ + HT LQK + + N PT
Sbjct: 162 AMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLG-NGDPT 211
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 23 ALQALNGTPQRESSSLTDLISAFDTKAQAHT-ELQKVTAFSGQFDKNHKPT 72
A++++NG + E S++ ++ DT+ + HT LQK + + N PT
Sbjct: 162 AMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLG-NGDPT 211
>At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein
similar to cellulase GI:575404 from [Sambucus nigra].
Length = 486
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 41 LISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDE 77
L SA+ Q H QK++ S QFD H F+K +
Sbjct: 346 LFSAYADILQKHN--QKISCGSHQFDSTHLMAFAKKQ 380
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 40 DLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKD 76
DL FDT + H +++K +FD++ P F KD
Sbjct: 51 DLFYHFDTFFEKHVKVRKDLRIEEEFDES-DPPFPKD 86
>At2g38630.1 68415.m04745 expressed protein
Length = 467
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 24 LQALNGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGNL 81
++A NG P+ E S +DL ++ ++ L+ +TA +D+ ++ + +G L
Sbjct: 407 IKANNGPPKEEDCSSSDLGNSSRRRSAVAEALEDITALF--YDEERNEIYTGNRHGLL 462
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 28 NGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDE 77
N +P RESSSL S + + Q + T F +HK +FS ++
Sbjct: 116 NSSPFRESSSLFASSSGDEQQQQQFSNNFLFTNDEDPFANSHKRSFSAND 165
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 28 NGTPQRESSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDE 77
N +P RESSSL S + + Q + T F +HK +FS ++
Sbjct: 116 NSSPFRESSSLFASSSGDEQQQQQFSNNFLFTNDEDPFANSHKRSFSAND 165
>At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 372
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 14 FVARCALSLALQALNGTPQRESSSLTDLI 42
F C+LS LQA GTPQ + + ++
Sbjct: 251 FTKVCSLSPELQAFTGTPQLARTEVVKML 279
>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
similar to Importin9 isoform 1 [Mus musculus]
GI:15186756; contains Pfam profile PF03810:
Importin-beta N-terminal domain
Length = 931
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 38 LTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEY 78
L LIS H L+ + SG+ D PT S D+Y
Sbjct: 139 LLKLISDPSNTNGVHGALRCLALLSGELDDKEVPTLSYDKY 179
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 26 ALNGTPQ-RESSSLTDLISAFDTKAQ 50
A+NG+PQ R SS+L D+ ++F Q
Sbjct: 80 AINGSPQPRSSSNLEDMRTSFTGSLQ 105
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 26 ALNGTPQ-RESSSLTDLISAFDTKAQ 50
A+NG+PQ R SS+L D+ ++F Q
Sbjct: 80 AINGSPQPRSSSNLEDMRTSFTGSLQ 105
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 26 ALNGTPQ-RESSSLTDLISAFDTKAQ 50
A+NG+PQ R SS+L D+ ++F Q
Sbjct: 80 AINGSPQPRSSSNLEDMRTSFTGSLQ 105
>At1g69650.1 68414.m08015 meprin and TRAF homology
domain-containing protein / MATH domain-containing
protein weak similarity to ubiquitin-specific protease
12 [Arabidopsis thaliana] GI:11993471; contains Pfam
profile PF00917: MATH domain
Length = 294
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 43 SAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSK-DEYGNLED 83
S++ K ++L+K T+FSG K FS D GN++D
Sbjct: 23 SSYSLKIHNFSQLEKTTSFSGH--KYQSRLFSSGDITGNVKD 62
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 35 SSSLTDLISAFDTKAQAHTELQKVTAFSGQFDKNHKPTFSKDEYGN 80
++SL+ + S +T + +T+F Q P+F YGN
Sbjct: 804 NASLSSMKSQQETSGIRASNADPLTSFGIQNQNQGMPSFGSSSYGN 849
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,756
Number of Sequences: 28952
Number of extensions: 60875
Number of successful extensions: 158
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 18
length of query: 90
length of database: 12,070,560
effective HSP length: 68
effective length of query: 22
effective length of database: 10,101,824
effective search space: 222240128
effective search space used: 222240128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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