GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001565-TA|BGIBMGA001565-PA|undefined
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   1.0  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    26   2.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.3  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 131 YQPSSADVLISLVLLLRFRSIKMIVYTLVL 160
           Y P+ ADV+ SL++ L FR I + V+++VL
Sbjct: 610 YHPA-ADVISSLIVDLPFRFINISVFSIVL 638


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 126 SRLLKYQPSSADVLISLVLLLRFRSIKMIVYTLVLNN 162
           +R+LKY P++ DV +S+++ L  R +    +T+ +N+
Sbjct: 87  TRILKYCPATNDVFLSVLIYLD-RIVHHFHFTVFINS 122


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 106 LIHVSR-PVGPLTMAQRTLRFSRLLKYQPSSADVLISL 142
           L HV+  P+  LT+  R LRFS+       S DV++SL
Sbjct: 115 LNHVNEYPLVLLTLTIRLLRFSKPTSAITCSNDVILSL 152


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,790
Number of Sequences: 5004
Number of extensions: 10609
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)