GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001564-TA|BGIBMGA001564-PA|undefined
         (612 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.29 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    27   0.50 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   3.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   3.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   3.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 392 DDDHKTEYDQSIDRDKISLDRYRDDEYMHDTIHEEDVDDRHMSEIPSSPRSPLHKVA-SP 450
           D++ + E   S+   + + DR  D+   H    +E+ +D+      +SPR P    A SP
Sbjct: 871 DEEERLENHTSVKIKREAEDRDEDERSFHSNGAKEEDEDKPSVSPLTSPRQPAETHAGSP 930

Query: 451 TR 452
            R
Sbjct: 931 CR 932


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 393 DDHKTEYDQSIDRDKISLDRYRDDEYMHDTIHEEDVDDRHMS--EIPSSPRSPLHKVASP 450
           ++ KTE    I     SL   ++DE +   + + D DD +++  +  +  R  L   ++ 
Sbjct: 2   EETKTEIKSKISFSVESLLSKKEDEEVEHRLSDRDDDDENITVDDDDTDGRESLSPSSAH 61

Query: 451 TRAISQMRKPSVDSY-HSQTPSVIDRRTSQSSFQHEDKLSVP----GKQEEQPTEKSKVT 505
           T  I Q   PSV    H Q P         SS Q       P      ++ +P  K +  
Sbjct: 62  TVLIPQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHKPNRKPRTP 121

Query: 506 FQDER 510
           F  ++
Sbjct: 122 FTTQQ 126


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 100 LLSKTVPSTISYLTQPPITSQQEI 123
           +L  T P   S  TQPP+TS   I
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNI 128


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 100 LLSKTVPSTISYLTQPPITSQQEI 123
           +L  T P   S  TQPP+TS   I
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNI 128


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 100 LLSKTVPSTISYLTQPPITSQQEI 123
           +L  T P   S  TQPP+TS   I
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNI 128


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.125    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,197
Number of Sequences: 317
Number of extensions: 4002
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 114,650
effective HSP length: 61
effective length of query: 551
effective length of database: 95,313
effective search space: 52517463
effective search space used: 52517463
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)