GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001564-TA|BGIBMGA001564-PA|undefined
         (612 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.028
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   4.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   7.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   7.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   7.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   9.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   9.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.1 bits (67), Expect = 0.028
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 400  DQSIDRDKISLDRYRDDEYMHDTIHEEDVDDRHMSEIPSSPRSPLHKVASPTRAISQMRK 459
            D+   RD   LDR   +  +H+   +ED D + ++  P  P+    +     +   Q+  
Sbjct: 1410 DEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNH 1469

Query: 460  -PSVDSYH---SQTPSVIDRR-----TSQSSFQHEDKLSVPGKQEEQPTEKSKVTFQDE 509
             P + + +   +   S  D +     +SQ + Q + +     +Q++QP ++S+   Q +
Sbjct: 1470 YPDLHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQ 1528



 Score = 23.0 bits (47), Expect = 7.3
 Identities = 12/59 (20%), Positives = 18/59 (30%)

Query: 306 VPTNQFSTGVAPVTPFSSKLPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRQESIQR 364
           VP N    G  P+ P +S   +                            L +QE++QR
Sbjct: 82  VPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQR 140


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 17  EPEKVIPDASYGYD 30
           +P  V+PD+ +GYD
Sbjct: 536 DPNYVVPDSEHGYD 549


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 26  SYGYDSYNYQPQYQDTATDLYTDNNY 51
           +Y Y++ NY+  Y +    LY + NY
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNINY 113


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 26  SYGYDSYNYQPQYQDTATDLYTDNNY 51
           +Y Y++ NY+  Y +    LY + NY
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNINY 113


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 26  SYGYDSYNYQPQYQDTATDLYTDNNY 51
           +Y Y++ NY+  Y +    LY + NY
Sbjct: 88  NYNYNNNNYKKLYCNNYRKLYYNINY 113


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 389 AYEDDDHKTEYDQSIDRDKISLDRYRDD 416
           A + +D++  Y Q I  D+ S D YR D
Sbjct: 26  AIKGNDYQ-RYHQQISGDRFSKDFYRQD 52


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 471 SVIDRRTSQSSFQHEDKLSVPGKQEEQPTEKSK 503
           S++DRR+  SS      L      ++   EKSK
Sbjct: 31  SIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSK 63


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 575  QEPERRDDKAEQPKFTARQRWHRAYNKIVMQ 605
            Q P +   + +Q   T R+R++   +K+ +Q
Sbjct: 1645 QRPMKESQENQQNAETQRERYYATIHKVALQ 1675


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 575  QEPERRDDKAEQPKFTARQRWHRAYNKIVMQ 605
            Q P +   + +Q   T R+R++   +K+ +Q
Sbjct: 1641 QRPMKESQENQQNAETQRERYYATIHKVALQ 1671


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,753
Number of Sequences: 429
Number of extensions: 5762
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 612
length of database: 140,377
effective HSP length: 62
effective length of query: 550
effective length of database: 113,779
effective search space: 62578450
effective search space used: 62578450
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)