Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001563-TA|BGIBMGA001563-PA|undefined
         (150 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43050.1 68415.m05342 pectinesterase family protein contains ...    32   0.14 
At3g49520.1 68416.m05412 F-box family protein contains weak hit ...    29   1.0  
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi...    29   1.3  
At4g38440.1 68417.m05432 expressed protein                             28   2.3  
At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00...    28   2.3  
At2g30470.1 68415.m03711 transcriptional factor B3 family protei...    28   2.3  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   2.3  
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof...    28   2.3  
At2g25820.1 68415.m03098 transcription factor, putative similar ...    27   5.3  
At4g09890.1 68417.m01620 expressed protein                             27   7.1  
At1g58070.1 68414.m06581 expressed protein                             26   9.3  

>At2g43050.1 68415.m05342 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 54  RSLETSRENSYERDEYHTHGDTDPLYYNSQPRTNRMDTWSQLHAQASMESAISWRTAADW 113
           RSL  +   S+   + HT    DP++   +   + +D  S++HA    E   +W +AA  
Sbjct: 77  RSLAFNLTLSHRTVQTHTF---DPIHDCLELLDDTLDMLSRIHADNDEEDVHTWLSAA-- 131

Query: 114 QSGEEQRRPSLERQSTLYDDGLGYGYESYTTTG 146
            + ++    SL+ +S  Y  GL   + +   TG
Sbjct: 132 LTNQDTCEQSLQEKSESYKHGLAMDFVARNLTG 164


>At3g49520.1 68416.m05412 F-box family protein contains weak hit to
           Pfam:PF00646 F-box domain and weak hit to TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 388

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 61  ENSYERDEYHTHGDTDPLYYNSQPRTNRMDTWSQLHAQASMESAISWRTAADWQSGEEQR 120
           +N++ RD+    G     Y N   +  R++  ++ H      S+ SWRT  D    +   
Sbjct: 136 KNTFHRDDSFALG-----YNNRNHKILRLNEENESHIDVYDFSSDSWRTVPD----DNPY 186

Query: 121 RPSLERQSTLYDDGLGYGYESYTTTGAHIG 150
           R  L  QS +   G  Y ++   TT A +G
Sbjct: 187 RDELIYQSGVSLKGNAYFFDREVTTEAEVG 216


>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1141

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 6    IDSFSVDIPAGYSEDSDYTSDLNYPVGQHANCSASQFRTAAHQMHTPQRSLETSR 60
            IDS ++    G+ ED         P   H +  + QF  + HQ H   +S+  S+
Sbjct: 1020 IDSSTLANTQGFREDQSQQQHTPSPSKHHMSSLSHQFHQSIHQSHQHHQSIYQSQ 1074


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 74  DTDPLYYNSQPRTNRMDTWSQLHAQASMESAISWRTAA----DWQSGEE 118
           +T P  Y+     N   TW   +    ++SA+SW T A     W+ G E
Sbjct: 737 ETLPNMYSQNIPRNESGTWDWSYVSPMIDSALSWITLAPQLLKWEKGIE 785


>At3g17280.1 68416.m02209 F-box family protein contains Pfam
          PF00646: F-box domain; contains TIGRFAM TIGR01640:
          F-box protein interaction domain
          Length = 386

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 1  MLTTSIDSFSVDI---PAGYSEDSDYTSDLNYPVG 32
          ++   ++S SVDI   P GYS   D+T  L  P G
Sbjct: 58 LMNHEVNSISVDIHGIPKGYSVSMDFTGTLTIPEG 92


>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 790

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 73  GDTDPLYYNSQPRTNRMDTWSQ---LHAQASMESAISWRTAADWQSGEEQRRPSL----E 125
           GD DP     + RT  +   ++   LH++ SME  ++W  A D        +P++    E
Sbjct: 457 GD-DPTRVKEKKRTRTIGAKNKRLLLHSEESMELRLTWEEAQDLLRPSPSVKPTIVVIEE 515

Query: 126 RQSTLYDDGLGYGYESYTTT 145
           ++   YD+   +G  +  TT
Sbjct: 516 QEIEEYDEPPVFGKRTIVTT 535


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 34  HANCSASQFRTAAHQMHTPQRSLETSRENSYERDEYHTHGDT 75
           HA+  +    + +HQ H+ +        +S++ +E+H H D+
Sbjct: 547 HAHGGSGCTHSHSHQSHSHKNEEHHQHSDSHKHEEHHQHSDS 588


>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
           PF03794: Domain of Unknown function
          Length = 980

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 7   DSFSVDIPAGYSEDSDYTSDLNYPV 31
           D +S+D PAGY  ++ Y+S +N  +
Sbjct: 556 DPYSMDPPAGYMNETPYSSAMNQQI 580


>At2g25820.1 68415.m03098 transcription factor, putative similar to
           TINY [Arabidopsis thaliana] GI:1246403
          Length = 166

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 69  YHTHGDTDPLYYNSQPRTNRMDTWSQLHAQASMESAISWRTAADWQSGE 117
           +H   D+ PL   ++  T +++ WS   + AS  S+ S  +++   SGE
Sbjct: 57  FHLQDDSTPL--QTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGE 103


>At4g09890.1 68417.m01620 expressed protein
          Length = 87

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 8  SFSVDIPAGYSEDSDYTSDLNYPVGQHANCSASQFRTAAHQMHTPQRSLETSRENSYERD 67
          SFS D   GY ++   + + N P          + R A++ +   +  L+++ +NS++  
Sbjct: 14 SFSTD-EFGYDQNRSNSYNFNGPCINTDPEMKRKKRVASYNLFATEEKLKSTLKNSFKWI 72

Query: 68 EYHTHGDTDPLYYN 81
          +    GD + + YN
Sbjct: 73 KNKFSGDDNSIRYN 86


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 99  ASMESAISWRTAADWQSGEEQRRPSLERQ 127
           A+M  ++S++   + ++GE+QRR  L R+
Sbjct: 188 AAMTKSVSFKDTKEKENGEDQRRKELMRK 216


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,863,711
Number of Sequences: 28952
Number of extensions: 146728
Number of successful extensions: 350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 11
length of query: 150
length of database: 12,070,560
effective HSP length: 75
effective length of query: 75
effective length of database: 9,899,160
effective search space: 742437000
effective search space used: 742437000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)