GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001563-TA|BGIBMGA001563-PA|undefined
         (150 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.28 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   7.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 58  TSRENSYERDEYHTH-GDTDPLYYNSQPRTNRMDTWSQLHAQASMESAISWRTAADWQSG 116
           TS  N Y ++   T+ G   P Y NSQ   N M   + +     M    +   AA     
Sbjct: 295 TSSHNYYAQNYAPTYYGQMQPDYLNSQTTQNHMQAMNNMAGTYQMTGYSAMGMAAPHHQN 354

Query: 117 EEQRRP 122
              R P
Sbjct: 355 FGPRHP 360


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 72  HGDTDPLYYNSQPRTNRMDTWS 93
           H    PL++++ PRT   +T S
Sbjct: 111 HPYLSPLFHSAAPRTASRETKS 132


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,173
Number of Sequences: 317
Number of extensions: 1512
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 150
length of database: 114,650
effective HSP length: 52
effective length of query: 98
effective length of database: 98,166
effective search space:  9620268
effective search space used:  9620268
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)