Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001563-TA|BGIBMGA001563-PA|undefined
(150 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 33 0.024
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 1.6
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.6
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 26 2.8
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 26 2.8
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 3.7
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 3.7
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 4.9
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 32.7 bits (71), Expect = 0.024
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 52 PQRSLETSRENSYERDEYHTHGDTDPLYYNSQPRTNRM---DTWSQLHAQASMESAISWR 108
PQ++ E S N+ + H+H D Y Q R+ R+ + + Q+S +W
Sbjct: 447 PQKNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQSQQPAWN 506
Query: 109 TAADWQSGEEQRRPS 123
++ +Q+ + + S
Sbjct: 507 VSSRYQNNSKVQTTS 521
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 39 ASQFRTAAHQMHTPQRSLETSRENSYERDEYHTHGDTDPL 78
A+ F AH+ P S T+ S H H + PL
Sbjct: 174 ATDFPNLAHESSEPSSSRHTADAQSITNASVHLHNSSSPL 213
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 1.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 4 TSIDSFSVDIPAGYSEDSDYTSDLNYPVGQHANCSASQFRTAAHQMHTPQRSLETSRENS 63
T +D+ V IP + + TS +YPV +AS ++ ++ TP S S ENS
Sbjct: 125 TPVDTVEVVIPTAGTFTTTLTSGSSYPVATTTVRTASGTQSGEVEVITP--SCGCSPENS 182
Query: 64 Y 64
+
Sbjct: 183 F 183
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 39 ASQFRTAAHQMHTPQRSLETSRENSYERDEYHTHGDTDPLYYNSQPRTNRMDTW 92
A+Q R A + +PQ E+ + YH HGD L Y N +DT+
Sbjct: 450 AAQLR-ALGVLDSPQLDYESDAVRLLA-EMYHGHGDAIALQYGGSLLVNTLDTY 501
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 38 SASQFRTAAHQMHTPQRSLE---TSRENSYERDEYHTHGDTDPLYYNSQPRTNRMDTWSQ 94
+ +Q + Q H+ Q L +++ N YE E + DP++ + + + + +Q
Sbjct: 16 NTNQASPSTIQSHSTQPVLSNDHSTKVNDYEGKEGASSNGYDPVFMSDRMKMRYNEITAQ 75
Query: 95 LHAQASME 102
LH + S++
Sbjct: 76 LHKEQSLK 83
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 66 RDEYHTHGDTDPLYYNSQPRTNRMDTWSQLHAQASMESAISWRTAAD-WQSGEEQ 119
R E H H DPL + D W L Q S+ + A+D W+ +Q
Sbjct: 300 RLEQHFHYTQDPLIIFLFEQNGTYDKWLGLETQLSLTKLEDIKIASDAWELESDQ 354
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 45 AAHQMHTPQRSLETSRENSYER--DEYHTHGDTDP 77
A HQ TP+ +L + ENS D HG T P
Sbjct: 253 AGHQQSTPKSTLSKTNENSEGTLYDSNVAHGCTHP 287
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 26 DLNYPVGQHANCSASQFRTAAHQM---HTPQRSLETSRENSYERDEYHTHGDTDPLYYNS 82
D+ P Q A + Q +H+ Q+ R N Y+ + Y T+ + ++
Sbjct: 142 DVAAPSSQPAKDQSQQISQGSHKRTINFVQQKDKRQKRSNDYQHENYDTYEAAERAFFKF 201
Query: 83 QPRTNRMDTWS 93
N +W+
Sbjct: 202 LDSHNVNPSWT 212
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 4.9
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 86 TNRM-DTW-SQLHAQASMESAISWRTAADWQSGEEQRRPSLERQS 128
TN++ D W S LH +A++++A + ++ +Q P LE Q+
Sbjct: 503 TNKVYDMWYSSLHGKANLKAATIKEIVNEIEAWRQQLSPDLEIQN 547
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.124 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 762,029
Number of Sequences: 5004
Number of extensions: 28626
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 2,362,478
effective HSP length: 67
effective length of query: 83
effective length of database: 2,027,210
effective search space: 168258430
effective search space used: 168258430
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -