GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001563-TA|BGIBMGA001563-PA|undefined
         (150 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   1.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   1.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 63  SYERDEYHTHGDTDPLYYNSQPRTNRMDTWSQLHAQASMESAI--SWR 108
           +YE ++  THG   P    +      M   S+L    SM+     SWR
Sbjct: 47  NYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWR 94


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 53  QRSLETS--RENSYERDEYHTHGDTDPLYYN 81
           +RS ET     N+Y    Y+ + ++  LYYN
Sbjct: 296 ERSKETKIISSNNYNYKNYNNNYNSKKLYYN 326


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 53  QRSLETS--RENSYERDEYHTHGDTDPLYYN 81
           +RS ET     N+Y    Y+ + ++  LYYN
Sbjct: 307 ERSKETKIISSNNYNYKNYNNNYNSKKLYYN 337


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 13  IPAGYSEDSDYTSDLNYPVGQHANCSASQFRTAAHQMHTPQRSLETSRENSYERDEYHTH 72
           IP GY     + + L +P  +         +     +H     + T+ +  Y  D Y  H
Sbjct: 290 IPTGYYPTMRFRNGLAFPQRETGATVPLHMQKYVQMIHDLHTRISTAIDLGYVVDSYGNH 349


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 17  YSEDSDYTSDLN 28
           Y+++SDY  DLN
Sbjct: 295 YAQESDYYPDLN 306


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 83  QPRTNRMDTWSQLHAQASMESAISWRTAADWQSGEEQRRP 122
           Q +  +     Q H     E A SW +A+D    E  + P
Sbjct: 450 QQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSP 489


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,039
Number of Sequences: 429
Number of extensions: 2409
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 150
length of database: 140,377
effective HSP length: 53
effective length of query: 97
effective length of database: 117,640
effective search space: 11411080
effective search space used: 11411080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)