Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001562-TA|BGIBMGA001562-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (86 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   1.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   1.8  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   2.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    20   4.2  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 59  RGGAVVGTNGPTGHTLLLDCRFE 81
           +G AV G + P GHTL ++ ++E
Sbjct: 256 QGFAVPGLS-PLGHTLSMNHKYE 277


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 22  VIWDRALGYHY 32
           V  DRA GYHY
Sbjct: 190 VCGDRASGYHY 200


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 27  ALGYHYLPLASVAYDEHECGG 47
           ++G++   +A + YD + CGG
Sbjct: 282 SVGWNDWIVAPLGYDAYYCGG 302


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 10  NLGLLVEVWNKGVIWDRALGYHY 32
           NL  L+     G +W   LG+ Y
Sbjct: 119 NLTYLLVALYSGYVWTDILGFGY 141


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.144    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,460
Number of Sequences: 317
Number of extensions: 842
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 86
length of database: 114,650
effective HSP length: 47
effective length of query: 39
effective length of database: 99,751
effective search space:  3890289
effective search space used:  3890289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)