Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001562-TA|BGIBMGA001562-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
(86 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50445| Best HMM Match : PT (HMM E-Value=2) 28 0.93
SB_50869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_30030| Best HMM Match : GATA-N (HMM E-Value=3.8) 27 1.6
SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8) 27 1.6
SB_42581| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.8
SB_44197| Best HMM Match : Flagellin_IN (HMM E-Value=7.7) 25 6.6
>SB_50445| Best HMM Match : PT (HMM E-Value=2)
Length = 206
Score = 28.3 bits (60), Expect = 0.93
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + + Q+ +G + TN PTG+
Sbjct: 126 EHKCTNRVPKQQTQMYQQGTSTPNTNVPTGY 156
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 92 EHKCTNRVPQHRTQMYQQGTSTPNTNVPTGY 122
>SB_50869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 6 EHKCTNRVPKQRTQMYQQGTSTPNTNVPTGY 36
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 63 EHKCTNRVPKQRTQMYQQGTSTPNTNVPTGY 93
>SB_30030| Best HMM Match : GATA-N (HMM E-Value=3.8)
Length = 160
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 6 EHKCTNRVPKQRTQMYQQGTSTPNTNVPTGY 36
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 40 EHKCTNRVPQHRTQMYQQGTSTPNTNVPTGY 70
>SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 38 VAYDEHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
V EH+C R + Q+ +G + TN PTG+
Sbjct: 69 VPQPEHKCTNRVPQHRTQMYQQGTSTPDTNVPTGY 103
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + QL +G TN PTG+
Sbjct: 164 EHKCTNRVSQHRTQLYQQGTLTPNTNVPTGY 194
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 232 EHKCTNRVPKQRTQMYQQGTSTPNTNVPTGY 262
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 6 EHKCTNRVPKHRTQMYQQGTSTPNTNVPTGY 36
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 198 EHKCTNRVPKQPTQMYQQGTSTPNTNVPTGY 228
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH C R + Q+ +G + TN PTG+
Sbjct: 107 EHNCTNRVPQHRTQMYQQGTSTPNTNIPTGY 137
>SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)
Length = 426
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 249 EHKCTNRVPKQRTQMYQQGTSTPNTNVPTGY 279
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 306 EHKCTNRVPKQRTQMYQQGTSTPNTNVPTGY 336
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + TN PTG+
Sbjct: 340 EHKCTNRVPQHRTQMYQQGTSTPNTNVPTGY 370
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G TN PTG+
Sbjct: 215 EHKCTNRVPKHRTQMYQQGTLTPNTNVPTGY 245
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + T+ PTG+
Sbjct: 181 EHKCTNRVPQHRTQMYQQGTSTPNTDVPTGY 211
>SB_42581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 44 ECGGRWVELEAQLMMRGGAVVGTNGPTGHTLLLDCRFEPP 83
E G W+ L + G P+GH L++D RFE P
Sbjct: 1 EGSGTWISLTLESSKEGPI------PSGHELMIDTRFELP 34
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 41 DEHECGGRWVELEAQLMMRG 60
D +C G+W ELE L M G
Sbjct: 582 DSAKCSGKWTELEFALNMLG 601
>SB_44197| Best HMM Match : Flagellin_IN (HMM E-Value=7.7)
Length = 338
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 42 EHECGGRWVELEAQLMMRGGAVVGTNGPTGH 72
EH+C R + Q+ +G + T+ PTG+
Sbjct: 275 EHKCTNRVPQHRTQMYQQGTSTPNTDVPTGY 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.144 0.476
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,902
Number of Sequences: 59808
Number of extensions: 114800
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 24
length of query: 86
length of database: 16,821,457
effective HSP length: 63
effective length of query: 23
effective length of database: 13,053,553
effective search space: 300231719
effective search space used: 300231719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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