Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001562-TA|BGIBMGA001562-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (86 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   8.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 22  VIWDRALGYHY 32
           V  DRA GYHY
Sbjct: 189 VCGDRASGYHY 199


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 67  NGPTGHTLLLDCRFEPP 83
           NGPT  TL     F PP
Sbjct: 298 NGPTQTTLNATTLFCPP 314


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 67  NGPTGHTLLLDCRFEPP 83
           NGPT  TL     F PP
Sbjct: 388 NGPTQTTLNATTLFCPP 404


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.144    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,166
Number of Sequences: 429
Number of extensions: 1117
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 140,377
effective HSP length: 48
effective length of query: 38
effective length of database: 119,785
effective search space:  4551830
effective search space used:  4551830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)