GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001562-TA|BGIBMGA001562-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   1.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   1.5  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   2.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    24   2.6  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    23   4.6  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    23   6.0  

>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
          spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 6  INDINLGLLVEVWNKGVIWDRALGY 30
          ++D    L++  ++K VIW R L Y
Sbjct: 61 VHDCTYALVINPYDKKVIWRRGLAY 85


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 9    INLGLLVEVWNKGVIWDRALGYHYLPLASVAY 40
            +NL  L  +W+  V W RA   H   L  V Y
Sbjct: 1467 VNLNYLYSIWSIFVHWHRAYYSHLDYLTEVEY 1498


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 28  LGYHYLPLASVAYDEHECGGRWVELEAQLMMRGGAVVGTNGPTGHTLLLDCRF 80
           +GY+  P  +  Y  +E    W   +    ++   V+ T   T +  +LDCRF
Sbjct: 353 IGYNIKPKHAEGYSSNEITHCWFWPKFSEFLKPRDVLITETGTANFGVLDCRF 405


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 49  WVELEAQLMMRGGAVVGT 66
           WV L A+L +RG  +VG+
Sbjct: 310 WVRLFARLFLRGSTLVGS 327


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 46  GGRWVELE---AQLMMRGGAVVGTNGPTGHTLLLDCRFEPPFDF 86
           GG+ + +E   A   M  G VVG   P  + L+L   F   +DF
Sbjct: 479 GGKTLTIETTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDF 522


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 802

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 30 YHYLPLASVAYDEHECGGRWVELEAQLMMRGGAVVGTN 67
          Y +L  A V  D     G W+++ ++    G  +VG +
Sbjct: 40 YSFLEKAKVIIDLCAAPGGWLQVASKTCKPGSLIVGVD 77


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.144    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,164
Number of Sequences: 5004
Number of extensions: 14185
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)