GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001562-TA|BGIBMGA001562-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    28   0.81 
12_02_1265 - 27435096-27437675                                         27   1.9  
02_03_0151 - 15759254-15760459                                         27   1.9  
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971...    26   4.3  
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    25   10.0 
03_02_0240 + 6721981-6722073,6722657-6722727,6723737-6723898,672...    25   10.0 

>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 10  NLGLLVEVWNKGVIWDRALGYHYLPLASVAYDEHECGGRWVELE 53
           N GLLV  W+    W      HY P AS  Y + E  G W E++
Sbjct: 523 NDGLLV--WDSIKEWVSDHVNHYYPSASDIYSDEELHGWWNEVQ 564


>12_02_1265 - 27435096-27437675
          Length = 859

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 12  GLLVEVWNKGVIWDRALGYHYLPL 35
           GLLV++W K    D+ALG+++  L
Sbjct: 579 GLLVDLWGKAGNVDKALGWYHAML 602


>02_03_0151 - 15759254-15760459
          Length = 401

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 33  LPLASVAYDEHECGGRWVELEAQLMMRGGAVVGTNGPTGHTLLL 76
           L LAS+A  E   G  W EL    + R   VV   GP  H ++L
Sbjct: 112 LSLASMAVSEDAVGAAWRELPPPRVWRVDPVVAAVGP--HVVVL 153


>10_08_0352 +
           17091637-17091945,17092049-17096617,17096975-17097187,
           17097266-17097494,17097857-17097981
          Length = 1814

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 41  DEHECGGRWVELEAQLMMRGG 61
           DE   GG W EL  +L+ RGG
Sbjct: 289 DEVRNGGEWEELVRRLLERGG 309


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 41  DEHECGGRWVELEAQLMMRGGAVVGTNGPTGHTLLLDCRFEPPF 84
           D   C  +   ++AQL + GG  +   G  GH   +  RF   F
Sbjct: 72  DFSSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSF 115


>03_02_0240 +
           6721981-6722073,6722657-6722727,6723737-6723898,
           6724529-6724614,6724808-6724810,6725257-6725270
          Length = 142

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 16  EVWNKGVIWDRALGYHYLPLAS 37
           EVW   ++W     YHY  L S
Sbjct: 89  EVWGANLVWTNCQMYHYKFLRS 110


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.144    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,516
Number of Sequences: 37544
Number of extensions: 119984
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)