GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001562-TA|BGIBMGA001562-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (86 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76940.1 68414.m08957 RNA recognition motif (RRM)-containing ...    27   1.5  
At2g29810.1 68415.m03621 kelch repeat-containing F-box family pr...    26   2.7  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    26   3.6  
At2g38340.1 68415.m04710 AP2 domain-containing transcription fac...    25   6.2  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    25   6.2  
At1g51570.1 68414.m05804 C2 domain-containing protein contains I...    25   6.2  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    25   6.2  

>At1g76940.1 68414.m08957 RNA recognition motif (RRM)-containing
           protein contains Pfam PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain); similar to RNA-binding
           protein with multiple splicing homolog (RBP-MS) (HEart,
           RRM Expressed Sequence) (Hermes) (Swiss-Prot:Q9YGI5)
           [Xenopus laevis]; similar to RNA-binding protein with
           multiple splicing (RBP-MS) (Swiss-Prot:Q93062) [Homo
           sapiens]
          Length = 233

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 46  GGRWVELEAQLMMRGGAVVGTNGPTGHTLLLDCRFEPP 83
           GG    ++  ++ RGG +   +GP GHT+     F+PP
Sbjct: 89  GGNVQTIDDFMLRRGGVLPLDHGPNGHTI----GFDPP 122


>At2g29810.1 68415.m03621 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif; similar to SKP1 interacting
           partner 6 (GI:10716957) [Arabidopsis thaliana]
          Length = 383

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 46  GGRWVELEAQLMMRGGAVVGTNGPTGHTLLLDCRF 80
           G   V ++ ++ + GG  +G N P    +++DCRF
Sbjct: 121 GSAVVTIDYKMYVLGG-FIGLNQPVSTMIVIDCRF 154


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 21  GVIWDRALGYHYLPLASVAYD 41
           G +WD A GY+Y   +   YD
Sbjct: 609 GYVWDEASGYYYDAASGYYYD 629


>At2g38340.1 68415.m04710 AP2 domain-containing transcription
           factor, putative (DRE2B) Similar to DREB2A (GP:3738230)
           and DREB2B (GP:3738232) [Arabidopsis thaliana]; DRE
           binding proteins may be involved in dehydration or low
           temp response
          Length = 244

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11  LGLLVEVWNKGVIWDRALGYHYLPLASVAYDEHECGGRWVELEAQLMMRGGAVVGTN 67
           LG         + +DRA    Y P A + + E   GGR  + EA+    GG  + TN
Sbjct: 104 LGTFATAAEAALAYDRAASVMYGPYARLNFPEDLGGGRKKDEEAE--SSGGYWLETN 158


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 35  LASVAYDEHECGGRWVELEAQLMMRGGAVVGTNGPTGHTLLLDC 78
           L  +AYD+ +     + L+ ++MM+    V T   T  TL L+C
Sbjct: 885 LCKLAYDKAKL--ELLHLKKEIMMKKFQAVSTGVQTSETLRLNC 926


>At1g51570.1 68414.m05804 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 776

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 25  DRALGYHYLPLASV--AYDEHECGGRWVELEAQLMMRGG 61
           D  LG   +PL  +   +D      RW  LE  ++M GG
Sbjct: 278 DEVLGRCAVPLQYLDKRFDYRPVNSRWFNLEKHVIMEGG 316


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 38  VAYDEHECGGRWVELEAQLMMRG 60
           +A DEH C   W   E  + M G
Sbjct: 104 IAVDEHRCDEAWRLFEQHMQMEG 126


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.144    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,488
Number of Sequences: 28952
Number of extensions: 85739
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 7
length of query: 86
length of database: 12,070,560
effective HSP length: 65
effective length of query: 21
effective length of database: 10,188,680
effective search space: 213962280
effective search space used: 213962280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)