GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
         (418 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    29   0.062
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    29   0.062
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    24   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   5.4  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   9.4  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 0.062
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 214 IKNVILHLNDV-FWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLIN 272
           IK V+  L+DV  W    NS+ + L++   N+L K L +D           E  +  L+ 
Sbjct: 133 IKLVLNILSDVTLWLSNVNSLTLTLKRKKWNLLFKTLTHD-----------EPRKSSLVQ 181

Query: 273 LLLSNTRNCNCKHNNVYLCR---KFEVLFRELVLNSELIQFY 311
           L+L+          N+Y+C+    FE   R+++L  +L   Y
Sbjct: 182 LILTQAIFLMFVSYNIYVCQTVSNFEYFQRKILLMIQLYYLY 223


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 0.062
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 214 IKNVILHLNDV-FWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLIN 272
           IK V+  L+DV  W    NS+ + L++   N+L K L +D           E  +  L+ 
Sbjct: 59  IKLVLNILSDVTLWLSNVNSLTLTLKRKKWNLLFKTLTHD-----------EPRKSSLVQ 107

Query: 273 LLLSNTRNCNCKHNNVYLCR---KFEVLFRELVLNSELIQFY 311
           L+L+          N+Y+C+    FE   R+++L  +L   Y
Sbjct: 108 LILTQAIFLMFVSYNIYVCQTVSNFEYFQRKILLMIQLYYLY 149


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 375 SSAIFKVLISHERKFIAERNSDSDKFAERHEKYLKFVEG 413
           S  I + LI H+R +  E     DK  E  +KY   ++G
Sbjct: 86  SKKIMRHLIDHKRDWWNELEEKYDKEGEYRKKYEAEIKG 124


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 170  LLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNVILHLNDVF--WK 227
            +L+ LKK TN+S+++L         R T  H             +K +++  + +   WK
Sbjct: 1163 ILHGLKKYTNYSMEVLAYTSGGDGVRTTPIHCQTEQDVPEAPIAVKALVMSTDSILASWK 1222


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 111 KPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEE 146
           +P+      Y    L+ ILQ + L  NY+  L+ ++
Sbjct: 18  RPEDQYTIKYDNVNLKEILQSDRLTENYVNCLLEKK 53


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,324
Number of Sequences: 317
Number of extensions: 4834
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 418
length of database: 114,650
effective HSP length: 58
effective length of query: 360
effective length of database: 96,264
effective search space: 34655040
effective search space used: 34655040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)