Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 51 3e-07
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 35 0.018
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 35 0.024
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 30 0.53
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 28 2.8
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 4.9
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 27 4.9
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 27 4.9
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 4.9
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 27 4.9
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 27 6.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 6.5
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 26 8.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 8.6
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 8.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 8.6
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom... 26 8.6
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 50.8 bits (116), Expect = 3e-07
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 25/165 (15%)
Query: 66 GRLLSVTLLL--NPELNTLWNKRRDMVLRNLLEKSS----------ELKLTRLVLSRKPK 113
G L T LL NPE ++WN RR+++L ++ K S ELK + PK
Sbjct: 47 GNLKLTTELLDWNPETYSVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPK 106
Query: 114 CNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNT 173
F +RRW LE NY + ++ E+ +++D N+H W++R ++++
Sbjct: 107 VYWIFNHRRWCLE---NAPYPNWNY-EMMITEKL----LSAD--ARNFHGWHYRRYVVSQ 156
Query: 174 LKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNVI 218
+++ N SL KE ++ + + S+FS H R I+ ++
Sbjct: 157 IERAGNCSLAK---KEMEYTTSAIATNFSNFSALHNRTKLIETIL 198
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 283 CKHNNVYLCRKFEVLFRELVLNSELIQFYKWHESLWYHRRYIVHEL 328
C N Y +E++ E +L+++ F+ WH +RRY+V ++
Sbjct: 117 CLENAPYPNWNYEMMITEKLLSADARNFHGWH-----YRRYVVSQI 157
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 35.1 bits (77), Expect = 0.018
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 82 LWNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQN 141
+W+ R+ +L EL+ T+ + K + YR W+L+ N+ N
Sbjct: 113 VWHHRQK-ILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQ----------NF--N 159
Query: 142 LVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSL--DLLYIKE 189
++E L +K N +WNHR ++L K+ ++SL +L Y+K+
Sbjct: 160 DYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKD 209
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 277 NTRNCNCKHNNVYLCRKFEVLFRELVLNSELIQFYKWHESLWYHRRYIVHE 327
+++N + V++ + F +EL L +EL++ ++ S W HR Y++ E
Sbjct: 141 DSKNYHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFE 191
Score = 27.1 bits (57), Expect = 4.9
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 101 LKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNN 160
L LT ++ P + YR +L N +YI N E L +IA D N
Sbjct: 62 LNLTGFLIMNNPAHYTVWAYRFQIL-------NHTPSYIDN---ELEWLDEIAEDFQ-KN 110
Query: 161 YHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKN 216
Y W+HR +L+ K Y +E F+++ ++ + YR + ++N
Sbjct: 111 YQVWHHRQKILSLTKN---------YERELEFTKKMFEIDSKNYHVWSYRVWILQN 157
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 34.7 bits (76), Expect = 0.024
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 139 IQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWT 197
+ N V +++C ++ YH + R++ L + T FS +YIKE N+ WT
Sbjct: 33 LDNGVESPYYICVQVENQGIEVYHMKDERLFASCPLPEKTRFSCSPIYIKEGNWHYIWT 91
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.3 bits (65), Expect = 0.53
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 241 FVNVLLKALQNDMTLLNADDNLMEYSEEKLINLLLSNTRNCNC 283
F V AL+N+ + DD + ++SE L++ L+NT +CNC
Sbjct: 169 FETVSRLALENESS---RDDFVNDFSEPLLLSKPLNNTSSCNC 208
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 84 NKRRDMVLRNLLEKSSELKLTRLVLSRKPKCN-EAFGYRRWLLEAILQDENLQSNYIQNL 142
N L L K SELKL + LS CN E F + + ++ NL ++ I L
Sbjct: 119 NDANQYTLELLHAKESELKLLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTDQIHTL 178
Query: 143 V 143
+
Sbjct: 179 I 179
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 4.9
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 186 YIKEYNFSERWTSKHVSDFSCFHYR-QYCIKNVILHLNDVFWKMFQNSIEIDLRKCFVNV 244
Y K FS+ S+H + F + ++ + L N VF K + N++ + + K F
Sbjct: 191 YFKS-KFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNAL-LSIGKKF--- 245
Query: 245 LLKALQNDMTLLNADDNLMEYSEEKLINLLLSNTRNCNCKHNNVYLCRKFEVLFRELVLN 304
L + + L D + + K I L + T+N + + Y+ ++V L
Sbjct: 246 ---QLNDFIALYEKDREQLHSRDWKKIQL--AKTQNDLGEFLD-YIISNYKVPIESLNQP 299
Query: 305 SELIQFYKWHESLWYHRRYIVHELIISMYEYF 336
S+ F+ + + HR Y VH I+ EYF
Sbjct: 300 SDQYSFHDAYLQSYTHR-YPVHRAIMCRCEYF 330
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 230 QNSIEIDLRKCFVNVLLKALQNDMTLLNAD-DNLMEYSEEK 269
QNSIE D+ K V+ +L+N + + AD D M Y+ K
Sbjct: 38 QNSIEDDMEKLIFGVVF-SLRNMVKKITADQDQFMSYTTSK 77
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 157 SPNNYHSWNHRMWLLNTLKKI-TNFSLDLLYIKEYNFSERWTSK 199
+P+ Y W+HR W+ + K T L L K+ N + + SK
Sbjct: 361 NPDRYVLWDHRFWIKYSCKNTQTTLILRPLLSKDLNSLKGFLSK 404
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 17 VLHLENC-LGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLGSIH 61
V H N LG++S V ++ +C+SE + F + +N L H
Sbjct: 227 VYHFHNSHLGMDSSTVSNLKRFCFSESLGHIFAPLRFQNQQLPLQH 272
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 4.9
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 69 LSVTLLLNPELNTLWNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAI 128
+++TL+L W RR M RNL + + KP N+AF + +
Sbjct: 368 MNITLMLCNACGIYWTSRRSMRPRNLWSTYKAFE------TEKPLENDAFAQLELAVYKL 421
Query: 129 LQDENLQSNYIQNLVNEEFH--LCQIASDKSPNNYHSWNH 166
Q L + + L N H L ++ S S ++ NH
Sbjct: 422 SQQRKLSISIFRELENAGRHSPLNRLTSLDSTHSAPDPNH 461
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 29 WCVKHVYMYCYSELMDKYFCKTKRRNSTLGSIHSEKLGRLLSVTLLLNPELNTLWN 84
WC+ YM S L Y R+ T I +++LG L +L + E N WN
Sbjct: 496 WCLDLNYMI--SLLSVGYEIPNNRQLHTAKKIDNKELGWCLGASLSMLSEQNNGWN 549
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 35 YMYCYSELMDKYFCKTKRRNSTLGSIHSEKLGRLLSVTLLLNPELNTLWN 84
+ + + + KY RR+ L ++ S+K ++SV LLL NT+++
Sbjct: 267 FFFSFPSYIIKYLMSHSRRSKLLSAVFSKKSFLIVSV-LLLIAHFNTIFH 315
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 174 LKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNVILHLNDVF 225
L+ I ++ D+ Y+ + RW+ K F C+ +V+++LN F
Sbjct: 265 LQLIRSWHTDVGYLSYVSLDRRWSYKDTLPFIFISILCGCLGSVLIYLNMKF 316
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.2 bits (55), Expect = 8.6
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 197 TSKHVSDFSCFHYRQYCIKNVILHLNDVF-WKMFQNSIE--IDLRKCFVNVLLKALQNDM 253
T KH++ FS +R CI + D WK+ N I R V+ + + ++ ++
Sbjct: 809 TKKHLASFSSEGFRTLCIARRTIDKQDYLEWKVNFNEANSAIHERNEKVSKVSEMIEQEL 868
Query: 254 TLLNA---DDNLMEYSEEKLINLLLSNTR 279
LL +D L E E + L ++ +
Sbjct: 869 ELLGGTAIEDKLQENVPETIALLAIAGIK 897
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 8.6
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 251 NDMTLLNADDNLMEYSEEKLINLLLSNTRNCNCKHNNVYLCRKFEVLFRELVLNSELIQF 310
ND+ L+ N+ + +KL+N +L N + N C + +L E V + F
Sbjct: 182 NDVLYLSKTANMKIWLLDKLLNRILFTLLNSDSLVNTSASCLQ-SLLDGEKVYGTSDKDF 240
Query: 311 YKWHESLWYHRRYIVHELIISMY 333
Y +++ Y R Y + +S Y
Sbjct: 241 YVPSKNVEYFREYFLCIRDLSQY 263
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 214 IKNVILHLNDVFWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLINL 273
I N++ + D+ ++ S EI N+++ LQN L D E++L+++
Sbjct: 734 IYNLLDFMCDIVFERVSISAEIPSNIRKANIMIPILQNVQMLFVYHDQFSRAQEDELVSV 793
Query: 274 LLSNTRNCN 282
+ + N
Sbjct: 794 FFAGLQKWN 802
>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 224 VFWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLINLL 274
V+ MFQ S DL+ C + N++ N D EYS +KL+N+L
Sbjct: 56 VYRFMFQESA--DLKHCNHKMQAWRFPNEIEAFNDDGE--EYSGQKLLNVL 102
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,734
Number of Sequences: 5004
Number of extensions: 93938
Number of successful extensions: 395
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 24
length of query: 418
length of database: 2,362,478
effective HSP length: 75
effective length of query: 343
effective length of database: 1,987,178
effective search space: 681602054
effective search space used: 681602054
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)
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