Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842... 67 2e-11
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309... 46 6e-05
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 45 1e-04
01_06_0287 + 28224956-28225216,28225385-28225641,28225789-282258... 43 5e-04
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 33 0.43
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 30 3.0
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 30 3.0
05_05_0001 + 21410408-21411391 29 5.2
04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614 29 9.2
02_05_0464 - 29256887-29257765,29258455-29258538 29 9.2
02_05_0282 - 27454714-27455814 29 9.2
>01_06_0285 +
28183108-28183209,28183495-28183754,28183950-28184237,
28184385-28184495,28184815-28184905,28185146-28185214,
28185627-28185716,28185887-28185937,28186040-28186258,
28186371-28186490
Length = 466
Score = 67.3 bits (157), Expect = 2e-11
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 29 WCVKHVYMYCYSELMDKYFCKTKRRNSTL-----GSIHSEKLGRLLSVTLLLNPELNTLW 83
WC H + +E++ K + + S GS L R L+L P++ T W
Sbjct: 156 WCKDHK-LAISTEILPKLYRAAQHAYSNSAAAKDGSFMETDLMRHSKALLILCPDMLTAW 214
Query: 84 NKRRDMVLRN--LLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQN 141
N R+ ++ N + EL+L L+LS PK + +RRW+++ + E+ Q +
Sbjct: 215 NSRKIVLSVNYDFTKLKDELQLCALILSYSPKNESTWSHRRWVIKKV--SEHNQD--VSE 270
Query: 142 LVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLL 185
L+ E L + ++KS NY +W HR WL+ + + + L LL
Sbjct: 271 LIEMESVLVKQIAEKSKMNYRAWRHRCWLIPYMTREQSLLLALL 314
Score = 39.1 bits (87), Expect = 0.006
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 158 PNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNV 217
P+ +WN R +L+ T D L + S ++ K+ S +S +R++ IK V
Sbjct: 208 PDMLTAWNSRKIVLSVNYDFTKLK-DELQLCALILS--YSPKNESTWS---HRRWVIKKV 261
Query: 218 ILHLNDVFWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLINLLLSN 277
H DV S I++ V + + + + L+ Y + +LLL+
Sbjct: 262 SEHNQDV-------SELIEMESVLVKQIAEKSKMNYRAWRHRCWLIPYMTREQ-SLLLAL 313
Query: 278 TRNCNCKHNNVYLCRKFEV--LFRE-LVLNSELIQFYKWHESLWYHRRYI 324
+C+ + L RK EV L++E L N +LI+ Y+ ESLW HRR++
Sbjct: 314 LDSCHVEDTEDSLDRKSEVHLLWKEELTWNEKLIRRYQGRESLWIHRRFL 363
Score = 38.7 bits (86), Expect = 0.009
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 134 LQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFS 193
L NY + +E LC + SP N +W+HR W+ +KK++ + D + E
Sbjct: 221 LSVNYDFTKLKDELQLCALILSYSPKNESTWSHRRWV---IKKVSEHNQD---VSELIEM 274
Query: 194 ERWTSKHVSDFSCFHYRQY 212
E K +++ S +YR +
Sbjct: 275 ESVLVKQIAEKSKMNYRAW 293
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 294 FEVLFRELVLNSELIQFYKWHESLWYHRRYIVHELIISMYEYFGLKKQNGALVKDNCKKC 353
F L EL L + ++ + +ES W HRR+++ ++ + L + LVK +K
Sbjct: 227 FTKLKDELQLCALILSYSPKNESTWSHRRWVIKKVSEHNQDVSELIEMESVLVKQIAEKS 286
Query: 354 NSN 356
N
Sbjct: 287 KMN 289
>09_04_0722 +
19729331-19729582,19730535-19730644,19730810-19730930,
19731080-19731175,19731429-19731838,19732251-19732309,
19733235-19733287,19733432-19733485
Length = 384
Score = 46.0 bits (104), Expect = 6e-05
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 75 LNPELNTLWNKRRDMVLRNL-LEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDEN 133
LNP T+W+ RR +VL L + E+ + PK + + ++RWL E + D
Sbjct: 78 LNPGNYTVWHFRR-LVLEALDADLREEMDFVDRIAECNPKNYQIWHHKRWLAEKLGPD-- 134
Query: 134 LQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTL 174
+ N+E + NYH+W+HR W+L L
Sbjct: 135 --------IANKEHEFTRKILSMDAKNYHAWSHRQWVLQAL 167
Score = 35.9 bits (79), Expect = 0.060
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 101 LKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNN 160
L LT V+ P + +RR +LEA+ D + EE ++ +P N
Sbjct: 69 LHLTAEVIDLNPGNYTVWHFRRLVLEALDAD-----------LREEMDFVDRIAECNPKN 117
Query: 161 YHSWNHRMWLLNTL-KKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIK 215
Y W+H+ WL L I N KE+ F+ + S ++ + +RQ+ ++
Sbjct: 118 YQIWHHKRWLAEKLGPDIAN--------KEHEFTRKILSMDAKNYHAWSHRQWVLQ 165
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 44.8 bits (101), Expect = 1e-04
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 63 EKLGRLLSVTLL-LNPELNTLWNKRRDMVLRNLLEKSS----------ELKLTRLVLSRK 111
E LG LS LL +NPE T WN R+ N+ E S EL++ + L +
Sbjct: 43 EALG--LSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVALRQN 100
Query: 112 PKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLL 171
PK A+ +R+WLL L + + EF L N+H WN+R +L
Sbjct: 101 PKSYGAWYHRKWLLNQKLAPVDFKC---------EFGLLDKLLKVDARNFHGWNYRRFLA 151
Query: 172 NTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNVILHLNDVF---WKM 228
+ + +E ++ S + S++S +H R + N+++ + F K+
Sbjct: 152 R--------FMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKI 203
Query: 229 FQNSIEIDLRKCFVN 243
F E+ + F +
Sbjct: 204 FSEEFELVTQALFTD 218
Score = 36.3 bits (80), Expect = 0.046
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 83 WNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNL 142
WN RR + + + ELK T +S A+ R LL +L ++ Q +
Sbjct: 144 WNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKI 203
Query: 143 VNEEFHLCQIASDKSPNNYHSWNHRMWLL 171
+EEF L A P++ W + +WLL
Sbjct: 204 FSEEFELVTQALFTDPSDQSGWFYHLWLL 232
>01_06_0287 +
28224956-28225216,28225385-28225641,28225789-28225899,
28225926-28226021,28226078-28226134,28226348-28226438,
28226610-28226678,28227091-28227180,28227390-28227440,
28227535-28227753,28228064-28228127,28228211-28228299
Length = 484
Score = 42.7 bits (96), Expect = 5e-04
Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 15/200 (7%)
Query: 134 LQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFS 193
L NY + +E LC + SP N +W+HR+ + ++ + L L I+
Sbjct: 177 LSVNYDFTKLKDELQLCALILSCSPKNESTWSHRLPNYRVWETLSGYLLSNLRIR---LG 233
Query: 194 ERWT--SKHVSDFSCFHYRQYCIKNVILHLNDVFWKMFQNSIEIDLRKCFVNVLLKALQN 251
+W + ++D + ++ + ++L V K+ +++ ++ +VL+K +
Sbjct: 234 RKWMPMTNRLNDIQQSY--KWLLVFMVLGRRWVIKKVSEHNQDVSELIERESVLVKEIAE 291
Query: 252 DMTL-LNADDN---LMEYSEEKLINLLLSNTRNCNCKHNNVYLCRKFEV--LFRE-LVLN 304
+ A + L+ Y + +LLL+ +C+ + L RK EV L++E L N
Sbjct: 292 KSKMNYRAWRHRCWLIPYMTREQ-SLLLALLDSCHVEDTEDSLDRKSEVHLLWKEELTWN 350
Query: 305 SELIQFYKWHESLWYHRRYI 324
LI+ Y+ ESLW HR ++
Sbjct: 351 QMLIRRYQGRESLWIHRIFL 370
Score = 38.7 bits (86), Expect = 0.009
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 121 RRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNF 180
RRW+++ + E+ Q + L+ E L + ++KS NY +W HR WL+ + + +
Sbjct: 261 RRWVIKKV--SEHNQD--VSELIERESVLVKEIAEKSKMNYRAWRHRCWLIPYMTREQSL 316
Query: 181 SLDLL 185
L LL
Sbjct: 317 LLALL 321
Score = 32.7 bits (71), Expect = 0.56
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 29 WCVKHVYMYCYSELMDKYFCKTKRRNSTL-----GSIHSEKLGRLLSVTLLLNPELNTLW 83
WC H + E++ K + + S G + L R L+L P++ T W
Sbjct: 112 WCKDHK-LAISMEILPKLYRAARHAYSNSAAAKDGPLMEIDLMRHSKALLILCPDMLTAW 170
Query: 84 NKRRDMVLR---NLLEKSSELKLTRLVLSRKPKCNEAFGYR 121
N R+ MVL + + EL+L L+LS PK + +R
Sbjct: 171 NSRK-MVLSVNYDFTKLKDELQLCALILSCSPKNESTWSHR 210
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 33.1 bits (72), Expect = 0.43
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 242 VNVLLKALQNDMTLLNADDNLMEYSEEKLINLLLSNTRNCNCKHNNVYLCRKFEVLFREL 301
V+ LL L + M +N EY + +NLL S R CNC + L R E +E
Sbjct: 343 VSSLLADLDSHMHAVNK-----EYVLDNSLNLL-SIIRECNCTLRWLLLHRMLEFEVKE- 395
Query: 302 VLNSELIQFYKWHESLWYHRRY 323
L++EL+ K +S+WY +R+
Sbjct: 396 -LHAELL---KTRKSMWYEKRH 413
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 30.3 bits (65), Expect = 3.0
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 68 LLSVTLLLNPELNTLWNKRRDMVLRNLLEKSSEL-----KLTRLVLSRKPKCNE-AFGYR 121
L S+ + ++PEL+T+W+ + + + + + S L +T LV+S P+ GY
Sbjct: 1237 LRSLDIDMDPELSTVWDLKLQELEQGVNQLQSRLLSFLPTITTLVISASPELTSLQLGYS 1296
Query: 122 RWLLEAILQD-ENLQS 136
+ L E I+ D E+L S
Sbjct: 1297 KALEELIIVDCESLAS 1312
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 30.3 bits (65), Expect = 3.0
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 90 VLRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAI---LQDENLQSNYIQNL 142
+L +L+ +E + L + + P N AFGYRR L+AI ++ E L+ I NL
Sbjct: 354 ILNHLIHNKNEYCMELLEIFQVPYENVAFGYRRVNLKAIKRLVKAEALKMEIIPNL 409
>05_05_0001 + 21410408-21411391
Length = 327
Score = 29.5 bits (63), Expect = 5.2
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 VPVDSNFRNKTPVLHLE-NCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
V VD + R P + + NC ES K Y YS +YFCK RR T G
Sbjct: 21 VVVDHHQRRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKG 75
>04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614
Length = 411
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 22 NCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
NC S K Y YS +YFCKT RR T G
Sbjct: 64 NCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEG 100
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 23 CLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
C ES K Y YS +YFCKT RR T G
Sbjct: 75 CPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKG 110
>02_05_0282 - 27454714-27455814
Length = 366
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 22 NCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
NC S K Y YS +YFCKT RR T G
Sbjct: 66 NCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEG 102
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,536
Number of Sequences: 37544
Number of extensions: 467067
Number of successful extensions: 1301
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 23
length of query: 418
length of database: 14,793,348
effective HSP length: 84
effective length of query: 334
effective length of database: 11,639,652
effective search space: 3887643768
effective search space used: 3887643768
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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