Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
(418 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34) 42 7e-04
SB_15238| Best HMM Match : PPTA (HMM E-Value=2.9e-38) 35 0.11
SB_29907| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 29 5.3
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3
SB_52712| Best HMM Match : Dynein_light (HMM E-Value=3) 29 9.3
SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9) 29 9.3
SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3
>SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)
Length = 428
Score = 42.3 bits (95), Expect = 7e-04
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 75 LNPELNTLWNKRRDMVLR-----NLLEK-----SSELKLTRLVLSRKPKCNEAFGYRRWL 124
+NP+++TLWN RR++ L+ EK EL + L PK + +R+W+
Sbjct: 57 VNPDVSTLWNFRREIFLKWREDGGFTEKLVNVSRKELAFLQGCLKVNPKSYGVWFHRQWV 116
Query: 125 LEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDL 184
E I + Q E LC + N+H W++R +I ++
Sbjct: 117 NEFIPAPDWTQ----------ELLLCNMFLSFDERNFHCWDYR--------RIVTKKANI 158
Query: 185 LYIKEYNFSERWTSKHVSDFSCFHYR 210
+E+ FS +++ S++S +HYR
Sbjct: 159 TAHEEFKFSTEKITENFSNYSSWHYR 184
>SB_15238| Best HMM Match : PPTA (HMM E-Value=2.9e-38)
Length = 183
Score = 35.1 bits (77), Expect = 0.11
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 87 RDMVLRNLLEK-SSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNE 145
R +VLR L + EL+ V+ +PK + + +RR L++ L D + + + Q+++
Sbjct: 61 RRLVLRALSKDLQEELEYVSRVIEDQPKNYQVWYHRRMLVDW-LGDGSQELEFTQSILRP 119
Query: 146 EFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITN--FSLDLLYIKEYNFSERWTSKH 200
+ NYH+W HR W++ N +D L ++ + W ++
Sbjct: 120 D-----------AKNYHAWQHRQWVIRAFNLWDNELEYVDKLLAEDLRNNSAWNQRY 165
>SB_29907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 30.3 bits (65), Expect = 3.0
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 162 HSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFS 205
++W R ++LNT + + L++ Y +EY + +T KH + S
Sbjct: 84 NAWYTREYMLNT-RYTREYKLNIRYTREYTLNSWYTRKHTPNTS 126
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 29.5 bits (63), Expect = 5.3
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 246 LKALQNDMTLLNADDNLMEY--SEEKLINLLLSNTRNCNCKHNNVYL 290
+KAL NDMTL +D L++Y + + LL+ RN +C +N+ L
Sbjct: 962 IKALNNDMTL---EDLLLKYCPGNKSKVKELLTMLRNDDCFESNIPL 1005
>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 80 NTLWNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCN 115
N +WN R++M L + +EK + L R+ LS+ P N
Sbjct: 184 NVMWNNRKEMFL-HFVEKHAPLCTKRVRLSKPPWIN 218
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 314 HESLWYHRRYIVHELIIS--MYEYFGLKKQNGALVKDNCKKCNSNDLRQK 361
H W H R V E II ++E K+ +G + DN NS+D K
Sbjct: 335 HGDEWRHGRVAVQEDIIFKVVFEAINGKRYDGEIAVDNISLVNSSDCMTK 384
>SB_52712| Best HMM Match : Dynein_light (HMM E-Value=3)
Length = 404
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 222 NDVFWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNA 258
N + W ++ +S IDL+K + + +K ++ND L+A
Sbjct: 148 NHIEWYIYPSSTYIDLKKTHIRLEVKFIKNDGANLSA 184
>SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)
Length = 602
Score = 28.7 bits (61), Expect = 9.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 354 NSNDLRQKQVKIVRYDCNHVYSSAIFKVLISHERKFIAE 392
N N + ++ I+RY H+Y +F + + RK A+
Sbjct: 143 NLNGIERRMTLILRYVLKHIYGGGVFDSITNLGRKIFAK 181
>SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.7 bits (61), Expect = 9.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 16 PVLHLENCLGLESWCVKHVYMYCYSELMDKYFCKTKRRN------STLGSIHSEKLGRLL 69
P L + +CL VY C S MD F + R L I + GRL
Sbjct: 465 PTLAIADCLSGPRRDASTVYYPCSSATMDSCFVLIRTRQHGIAGLPQLNFIGKKTAGRLR 524
Query: 70 SVTLLLNPELNTLWN 84
L P+L ++W+
Sbjct: 525 PERRALKPQLRSMWD 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,019
Number of Sequences: 59808
Number of extensions: 619591
Number of successful extensions: 1864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 11
length of query: 418
length of database: 16,821,457
effective HSP length: 84
effective length of query: 334
effective length of database: 11,797,585
effective search space: 3940393390
effective search space used: 3940393390
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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