GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
         (418 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    25   3.8  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   5.1  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 31  VKHVYM---YCYSELMDKYFCKTKRRNSTLGSIHSEKLGRLLSVTLLLNPELNTLWNKRR 87
           VKHV +   Y Y +L +  + K      T   I S+    LL  +L    +   +WN+  
Sbjct: 536 VKHVDVKSAYLYGDLAETIYMK----QPTGFEIGSKNDVCLLKKSLYGLKQAGRVWNQTI 591

Query: 88  DMVLRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEF 147
             VLR+L   SSE      V +++ + +    Y   +L A  +D   +   I+N +   F
Sbjct: 592 TEVLRSLGFHSSEADPCLFVKNKRDRWSFILLYVDDMLVACSEDREYED--IENTLKRHF 649

Query: 148 HL 149
            +
Sbjct: 650 KI 651


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 195 RWTSKHVSDFSCFHYRQYCIKNVILHLNDV 224
           RWT + + D + +H+R++    V  HL+ V
Sbjct: 916 RWTHRVIPDIAAWHFRRH--GEVNFHLSQV 943


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,271
Number of Sequences: 2123
Number of extensions: 18986
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 2
length of query: 418
length of database: 516,269
effective HSP length: 66
effective length of query: 352
effective length of database: 376,151
effective search space: 132405152
effective search space used: 132405152
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)