GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
         (418 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical ...    60   3e-09
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    41   0.001
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    31   1.5  
Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    31   2.0  
U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    30   2.7  
AL132948-30|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    30   3.5  
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF025464-4|AAB71017.3|  310|Caenorhabditis elegans Mnat (menage ...    29   4.6  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    29   6.1  
Z77661-6|CAB01185.1|  192|Caenorhabditis elegans Hypothetical pr...    29   8.1  
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    29   8.1  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    29   8.1  

>AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical
           protein R02D3.5 protein.
          Length = 328

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 62  SEKLGRLLSVTLLLNPELNTLWNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCNEAFGYR 121
           S+++  LL   + LNP   T+W  RR  +     +   E++    ++   PK  + + +R
Sbjct: 59  SDRVMALLEDCIRLNPANYTVWQYRRVCLTELGWDLKKEMRYLSDIIQESPKNYQVWHHR 118

Query: 122 RWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNT----LKKI 177
           R+++E I +          + VN+E H C         NYH+W HR W++ T    L+K 
Sbjct: 119 RFIVETIGE----------SAVNDELHFCSEVIRDENKNYHAWQHRQWVVRTFKVPLEKE 168

Query: 178 TNFSLDLLYIKEYNFS 193
             F+L +L +   N S
Sbjct: 169 LTFALHMLLLDNRNNS 184


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)

Query: 91  LRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLC 150
           + NLL  + EL L+   +   PK   A+  R W L+     +            +E  LC
Sbjct: 101 IENLL--AGELFLSYECIKSNPKSYSAWYQRAWALQRQSAPD----------FKKELALC 148

Query: 151 QIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYR 210
           + A      N+H W+HR  +    K+           +E  FS +  + + S++S +HYR
Sbjct: 149 EKALQLDCRNFHCWDHRRIVARMAKRSE--------AEELEFSNKLINDNFSNYSAWHYR 200

Query: 211 QYCIKNV 217
              +KN+
Sbjct: 201 SIALKNI 207



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 94  LLEKSSEL----KLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHL 149
           +LEK++++     + R  +  + + NE     +   +A  +++   S  I+NL+  E  L
Sbjct: 55  ILEKNADIYTFWNIRRTTIELRMEANEKV---QQSADAEEEEKTKSSQKIENLLAGELFL 111

Query: 150 CQIASDKSPNNYHSWNHRMWLL 171
                  +P +Y +W  R W L
Sbjct: 112 SYECIKSNPKSYSAWYQRAWAL 133


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
           protein T05H4.3 protein.
          Length = 1152

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 166 HRMWLLNTLKKITNFSLDLLYIKEY--NFSERWTSKHVSDFSCFHYRQYCIKNVILHLND 223
           H + + N+ K + N   +   + EY  + S+   S  +     F  R    + +      
Sbjct: 323 HEICVSNS-KAVKNIKKNYTVLSEYIRSLSKYQISSDMESCQTFQLRDGTAEEIAFITQT 381

Query: 224 VFWKM-FQNSIEIDLRKCFV-NVLLKALQNDMTLLNADDNLMEYSEEKLINLLLSNTRNC 281
           + +    +NS EI ++ C V   + K   + + +L  D N   +    + NLL   TR  
Sbjct: 382 LNYSCSMKNSYEIIVKSCSVLGNITKNETDRLFILEKDSNEKLFDLRTIFNLLDRFTRKD 441

Query: 282 NCKHNNVYLCRKFEVLFRE 300
             KH  V L R FEV+ ++
Sbjct: 442 YTKH-AVRLIRDFEVIKKQ 459


>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 136 SNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSER 195
           + Y+ +++N + +  QI  +     + +     WL + L+KI + S+   YI + +FS  
Sbjct: 345 TEYVMDVLNCQLNYFQITMNNFDFGFQNQQIISWLASRLEKIRHLSVSGWYISKEDFSST 404

Query: 196 WTSKHVSDFS-CFHYRQYCIKNVIL 219
            T   V         R+ C   +I+
Sbjct: 405 LTKLAVCHLHFSVSVREKCDNKIII 429


>U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical
           protein T21F2.1a protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 21/135 (15%)

Query: 131 DENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLN-TLKKITNFS-LDLLYIK 188
           +E L+ N +Q L ++ +       DK  NN  S N    ++  T++ IT  S     +  
Sbjct: 81  NETLRKNLLQELFDDSY-------DK--NNLPSANSTEVIVELTVQSITEISEFSSSFKA 131

Query: 189 EYNFSERWTSKHVSDFSCFHYRQYCIKNVIL--HLNDVFWK---MFQNSIEIDLRKC-FV 242
           +  FS+ W    + DFS    R YC+KN+ L  H     W     F NS ++++      
Sbjct: 132 DVWFSQIWRDPRL-DFSD---RNYCLKNISLASHKLPTMWSPNVCFVNSKKVEIHASPSQ 187

Query: 243 NVLLKALQNDMTLLN 257
           N+LL    N    LN
Sbjct: 188 NILLLIFPNGTVWLN 202


>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 215 KNVILHLNDVFWKMFQNSIEIDLRK-------CFVNVLLKALQNDMTLLNADDNLMEYSE 267
           +NVI HL  +FW    NS E D R         F N   K + +  T+L+ +D+L     
Sbjct: 436 ENVITHLKTIFWVRIDNSSEQDSRSKQLIEPMYFDNSTAKII-SSRTILSIEDDLRRMMR 494

Query: 268 EKLINLLLSNTRN 280
           +  +  +  N  N
Sbjct: 495 KPKLREIFKNLPN 507


>AL132948-30|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 382 LISHERKFIAERNSDSDKFAERHEKYLKFVEGLNI 416
           LI HE K  A      +K    HE++L+  EGL I
Sbjct: 212 LIDHEAKIKAGIEPQWEKVTTEHERFLEMAEGLRI 246


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 10  NFRNKTPVLHLENCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLGSIHSEKLGRLL 69
           N  N+  V  LE CL    +C   +       LM+    +T R++  L  + + K    +
Sbjct: 72  NMENEKKVQQLEQCLSTHDYC--QMLEKNMESLME--VVRTLRKDLDLSKLQNAKDKLEI 127

Query: 70  SVTLLLNPELNTLWNKRRDMVLRNLLEKSSELKLTRLVLSRK 111
             T   N +L    N  R  VL + L + SEL      L+ K
Sbjct: 128 YETQEENQKLEAEVNALRKEVLESKLSEQSELSKVNETLNMK 169


>AF025464-4|AAB71017.3|  310|Caenorhabditis elegans Mnat (menage a
           trois) tfiih subunitprotein 1 protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 350 CKKCNSNDLRQKQVKIVRYDCNH 372
           CKKC SN+   KQ+ ++  +C H
Sbjct: 4   CKKCKSNEYTNKQLVMMINECGH 26


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 298 FRELVLNSELIQFYKWHESLWYHRRYIVHELIISMYEYFGLKKQNGALVKDNCK 351
           FR + ++ E++ FY+ H+          H+L+ SM++Y  +  +N  L+ D  K
Sbjct: 100 FRTMNIDYEIVGFYQSHQ----FGAGFSHDLVESMFDYQAMGPENVVLIYDPIK 149


>Z77661-6|CAB01185.1|  192|Caenorhabditis elegans Hypothetical
           protein F40G12.7 protein.
          Length = 192

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 17/121 (14%)

Query: 49  KTKRRNSTLGSIHSEKLGRLLSVTLLLNPELNTL---WN--KRRDMVL--RNLLEKSSEL 101
           K K+  + L   HSEKLG+L      +  EL T+   W   KR   VL   N   ++++ 
Sbjct: 46  KLKKIRNKLNGEHSEKLGKLNDKYKAVQEELKTMKQSWTQLKREKGVLETENRRLETAKS 105

Query: 102 KLTRLVLSRKPKCNEAFGYRRWLLEAILQD---ENLQSN-----YIQNL--VNEEFHLCQ 151
           +L R +L +  +   A    R +L++ L+    E L+ N     Y+ NL  V+E+ H  +
Sbjct: 106 ELDRQLLGKNDELRMADVEGRGVLKSSLEKQLCEELKKNNEDMMYVCNLLIVSEDAHFHR 165

Query: 152 I 152
           +
Sbjct: 166 V 166


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 331 SMYEYFGLKKQNGALVKDNCKKCNSNDL 358
           S  E+ G K      + +NCKK N NDL
Sbjct: 218 SKIEFLGEKLNKKDFLNENCKKLNKNDL 245


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 49   KTKRRNSTLGSIHSEKLGRLLSVT--LLLNPELNTLWNKRRDMVLRNLLEKSSELKLTRL 106
            +T R +  L S   E+L R L      ++  +LN  W ++ D++  N+ +K+ EL     
Sbjct: 1447 ETMRNDQGLRSSEIERLQRKLKANDPSVIKLQLNKEWKEKLDVLEANITKKNEELTACNR 1506

Query: 107  VLSR 110
             L R
Sbjct: 1507 TLLR 1510


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,071,623
Number of Sequences: 27539
Number of extensions: 485990
Number of successful extensions: 1742
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 18
length of query: 418
length of database: 12,573,161
effective HSP length: 83
effective length of query: 335
effective length of database: 10,287,424
effective search space: 3446287040
effective search space used: 3446287040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)